Cololabis saira (Pacific saury): 133464425
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Entry
133464425 CDS
T09849
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csai03021
]
133464425 (taf1b)
Transcription machinery [BR:
csai03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
133464425 (taf1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Zn_ribbon_RRN7
Rrn7_cyclin_N
DUF5816
Motif
Other DBs
NCBI-GeneID:
133464425
NCBI-ProteinID:
XP_061602382
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Position
18:complement(3203887..3234440)
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AA seq
602 aa
AA seq
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MDEEDTAGFREPCTECAAVDWGVSEEGRFFCRSCHNVIERTKEVVDTSFNVTFSKVTNMR
RGPRNKEPEQGFPWMVCEGFQFILLNQADALLRLGVGSHFKDEVLRQLWRLYLQRSRQAY
VRDPGPGSATRLRGVVSDTDSMVDSCTSASESGPLSYVSTDQEGVSDWSGSTDGGAYRRG
RRRRNHKLMSMKKTLALLHLALVWSREALTLSDLLRLVRDGFVPYVNAHEQLPEWMKLYG
KDAFLFQVEEVPAHHVVHRKAQALAVFLQLPAFPPITAQSLLHPAPLSLRYLMDANLPDE
LHPWVCALTERAGLAEPARLTFHPRTRPLLPQYDVQAAALIIVTMKVVFGLDDHIEWDLS
NHTGLRDDAGEQFHLRTWYKLLEAALARARQKREQDLARKQWKSKKPVYDRKLEKCRIIQ
KKRTAEQLRSCFQKLSSCPVEVQGDAPSSFTFRWGDEDGSDGPSLHHLKLGGVVTVRRCV
QSPLNRCYWHPALKPCCHWSCVSHLSEVEATLPRSFTWLLQLFSFLLDLQPCYLYEEVLA
VERRVFGPKTPPEDSDLDLNHLEPRGRPRPRPRRRARGSPRGVGRARAGAGPQRLHSPGS
LL
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggaagacacggctgggttccgggagccctgcaccgagtgtgcggcggtggac
tggggcgtctcagaggaaggtcgcttcttctgcagatcctgccacaacgtgatcgagagg
accaaggaggtggtggacacgtccttcaacgtgaccttcagcaaggtcaccaacatgagg
agaggaccccgcaacaaggaaccagaacagggtttcccgtggatggtgtgtgagggcttc
cagttcatcctgctgaaccaggccgacgccctgctcaggctgggagtcgggtcgcacttc
aaggacgaggtgctgcgtcagctgtggagactgtacctgcagaggagccgccaggcgtac
gtgcgcgacccagggcccggctccgccaccagactgcggggcgtggtgtcggacacggac
agcatggtggactcctgcacctcggccagcgagtccggcccactcagctacgtcagcacc
gaccaagagggcgtcagtgattggtccggctccacggatggcggtgcctaccggcggggc
cggcggcgccggaaccacaagctgatgagcatgaagaagactctggcgctgctgcacctg
gcgctggtgtggagccgggaggcgctgacgctcagcgacctgctcagactggtcagagac
ggcttcgtcccgtacgtgaacgcccacgaacagcttcctgagtggatgaagctgtatggg
aaggacgcctttctcttccaggtggaggaggtcccggcccaccacgtggtgcacaggaag
gcccaggccctggccgtcttcctgcagcttcctgcctttcctccaatcacggcgcagagt
ctgctccacccggcgccgctcagcctgcgctacctgatggatgctaacctgcccgacgag
ctgcacccgtgggtgtgcgcgctgacggagcgtgcaggtctggctgagccggcccgcctg
accttccaccccaggacacggcccttgctgccgcagtacgacgtccaggccgccgccctc
atcatcgtcaccatgaaggtcgtctttggcctggacgaccacattgaatgggacctgtcc
aaccacactggtctccgtgacgacgcaggggagcagttccacctgaggacctggtacaag
ctgctggaggccgccctggcccgggcccggcagaagagggagcaggatctggccaggaag
cagtggaagtccaagaaaccagtttacgatagaaagctggaaaaatgccggatcatccaa
aagaaaagaacggcggagcagctgcggagctgctttcagaagctgtcctcctgtccggtg
gaggtccagggagacgctccgtccagcttcacgttccgctggggggacgaggacggctcc
gacggtcccagcctgcaccacctgaagctggggggggtggtgaccgtgagacgctgcgtc
cagagtcccctgaaccgctgttactggcacccggcgctgaagccctgctgccactggagc
tgcgtcagccacctctcggaggtggaggccacgctgccccgctccttcacctggctgctg
cagctcttctccttcctgctggacctgcagccctgctacctgtacgaggaggtgctggcc
gtggagaggagggtgttcggccccaagacccccccggaggactcggacctggacctgaac
cacctggagccccggggacggccccggcccaggcccaggagacgggccaggggaagcccc
aggggcgtgggccgggccagggcgggtgcaggaccccagcgtctccacagccctggatct
ctgttgtag
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