KEGG   Cololabis saira (Pacific saury): 133464767
Entry
133464767         CDS       T09849                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
csai  Cololabis saira (Pacific saury)
Pathway
csai03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:csai00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    133464767 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:csai03400]
    133464767 (tdp1)
DNA repair and recombination proteins [BR:csai03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     133464767 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 133464767
NCBI-ProteinID: XP_061602938
LinkDB
Position
2:50508565..50524561
AA seq 606 aa
MSQDSQHGKWTISSSDDDDERLPPSGAPPESRRPTDTKPASPVRVPATMKVEAEPAGGHV
TSVASGSEARQSDPVKYESSPAPAGKRKSDVSEGTGWALSDSDEGDGDVKGNGLGDPPKR
APSGPKAKKAKVESERPPSPHGRTYYIDEPQDFFESCVPCLNDTYRFYLNKVTGLDRKYN
AGALHIRDILSPLFGTIKESVQFNYCFDIAWMVKQFPSEFRDRPVLIVHGDKREAKARLL
QQAQPFPHVRFCQAKLDIAFGTHHTKMMLLWYEEGFRVIILTSNLIRADWYQKTQGMWMS
PLFPRLPEGSSASAGESPTFFKRDLLEYLASYRAPELEEWIQRIGEHDLSETRVHLVGSS
PGRYVGPDMERWGHLRLRKLLRDHTNPLPGEERWPVIGQFSSIGSMGPDKSKWLCGEFQR
TLSTLGKSSLRPDPSMHLLYPSVDDVRTSLEGYPAGGSLPYSVQTAQKQTWLHSFFHRWK
ADATGRSHAMPHIKTYMRASPDFSQLAWFLVTSANLSKAAWGALEKNGSQVMVRSYELGV
LYVPSDFNLKTFPVDRNPFPVSSSSSGFTVPFDLPPTSYSPKDQPWIWNIPQAQAPDTHG
NIWVPS
NT seq 1821 nt   +upstreamnt  +downstreamnt
atgtctcaggacagtcagcatggaaagtggaccatctccagcagtgatgatgatgatgag
cgtcttcctccttctggggctccacctgagtcccgtcggccgactgacaccaaacctgcg
tctccagtccgggtgccggccaccatgaaggtggaagcagaaccggccggaggtcacgtg
acctcagtagccagcggttctgaggccagacagtcagatccagtaaagtacgagagcagc
cctgccccggccggcaagaggaagtccgacgtttcagagggcacggggtgggctctgtcg
gacagcgatgagggggatggagacgtgaaggggaacggcctcggcgacccgcccaagaga
gcgccatcggggcccaaagcaaagaaggccaaggttgagagcgagcgtcctcccagccct
cacggacggacctactacatcgacgagccgcaggacttctttgagtcgtgcgttccttgt
ctcaatgacacctacaggttctacctcaacaaggtcacaggcctggacaggaagtacaat
gccggggctctgcacatcagagatatcctctcaccgctatttgggaccataaaagagtct
gttcagtttaactactgctttgatattgcttggatggtaaaacagttcccatcagagttt
agggatcggccggttttgatcgtgcacggagataagcgggaggccaaggcacggctgctc
cagcaggctcagccctttccacatgttcgcttttgccaggccaagctggacattgctttt
ggaacccaccacacgaagatgatgctgctgtggtacgaggaaggtttcagagtcatcatc
ctcacctccaacctcatcagagccgactggtaccagaagacacaggggatgtggatgagc
cctctgttcccacggttaccagaaggaagcagcgcgagcgcgggcgagtcgcccaccttt
ttcaagagggatctgctggagtacctggcttcgtaccgcgccccagagctggaagagtgg
atccagcggatcggagagcacgacctgtcggagacgagggtgcatctggtgggatccagc
ccgggcaggtacgtgggccccgacatggagcgctggggccacctgagactgaggaagctg
ttgcgcgatcacacaaatcctcttcctggggaggaacggtggcctgtgattggccagttc
tccagcatcggctccatgggaccggataagagcaagtggttgtgtggggagtttcagcgc
acgctgagcacgctgggaaagtcttccctccgtccggacccgtccatgcatctgctgtat
ccgtcagtagacgacgtgagaaccagcttagaaggctacccagccggaggttctcttcct
tacagcgtccagaccgcccagaaacagacctggctccactcctttttccatcgctggaaa
gcggatgcgacggggcggagtcacgccatgccgcacatcaagacgtacatgagggcttcg
ccagatttctcacagctcgcctggttcctcgtcacaagtgccaacctgtccaaggcggcg
tggggggcgctggagaagaacggctctcaggtgatggtgcgctcgtacgagctgggcgtc
ctctacgtgccctcggacttcaacttgaagacattcccggttgataggaatccatttccc
gtctcatcctcctcctccggattcacagtgccctttgacctcccgcctacaagctattct
ccaaaagaccaaccgtggatctggaatatcccgcaggctcaggcgcccgacacccacggc
aacatctgggttccctcgtga

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