Chryseobacterium salivictor: NBC122_01335
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Entry
NBC122_01335 CDS
T07515
Symbol
recQ_3
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csal
Chryseobacterium salivictor
Pathway
csal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NBC122_01335 (recQ_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csal03019
]
NBC122_01335 (recQ_3)
03400 DNA repair and recombination proteins [BR:
csal03400
]
NBC122_01335 (recQ_3)
Enzymes [BR:
csal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NBC122_01335 (recQ_3)
Messenger RNA biogenesis [BR:
csal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NBC122_01335 (recQ_3)
DNA repair and recombination proteins [BR:
csal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NBC122_01335 (recQ_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
KH_GLD-3_2nd
DUF6042
CC_PcsB
Motif
Other DBs
NCBI-ProteinID:
QBO58162
UniProt:
A0A4P6ZFC8
LinkDB
All DBs
Position
1406099..1408006
Genome browser
AA seq
635 aa
AA seq
DB search
MISSQDFEKLKQQTLKHFWGYDTFRDSQETIINSIISGKDTLALLPTGGGKSLCYQLPAL
VLEGTCLVISPLLALMKDQVYQMKNIGIEAEYLSSELDEYDAEIIFNRCKDGLTKLLYIS
PERLTNRLFLQNLEEIQISFIAVDEAHCISEWGQDFRPSYQHIKAFRNQLKNIPCIALTA
TATPKVLQEIQLKLNLKNPAIFQKSFRRSNLKIVSDEIADKYERIRNLLKYNNSSGIIYV
RTRKEAEELTAFLHRNQITNVDFFHAGIPVKEKNAKQNRWLQSQNQVLISTNAFGMGIDK
DNVRFIIHFSPAASIENYYQEIGRAGRDGSVSYAFLLWNEQELKNFDQILINQIPSKAEF
QNIVSYLYSTFQIAENDLPENVFQLHIQRIQKFTKVSLAKIRNVLQFLHHQEIIFYNYQN
SLSSLELKIAPDEIDLLPKKDAYFIELLLRALSGLTTHKVMFSEKSLSTKIESDPHLIKE
RLRELQHQGHLDYIDGALSSVKFLKHRDQRAIEGKYWNLFAQIQKNKIQKWEEMKFFVQN
SEFCKMKLILSYFGEKNVKNCGHCSVCEQQKETVFGRDVSREILEILKNGPANVEEISIK
LNYFVKENILENLIHLLDSGKVKMLNFRTYCYNHD
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgatttctagccaggattttgaaaaattaaaacagcagaccttaaagcatttttggggt
tacgatacctttcgggattcgcaggaaacaatcattaattcaattatttccggcaaagat
accttggccctgctcccaacaggtggcgggaaatcactttgttatcaacttccggctttg
gttttagaaggaacctgtctggtgatatctccgcttttggctttgatgaaggatcaggtt
tatcaaatgaaaaatatcggcattgaagctgaatatctctcgtcggaactggatgaatac
gatgccgaaattatttttaaccgttgcaaagacggcttgaccaaattactgtacatttct
cccgaacgactaaccaacaggttatttcttcaaaatttagaagaaattcagatttcattt
attgccgtagacgaagcgcactgtatttcggaatgggggcaggatttccggccgagttat
cagcatatcaaagcctttagaaatcagttaaaaaatattccctgcattgcattaactgca
accgcgactccaaaagttttacaggaaatacagttgaaactcaatctgaaaaacccggca
atctttcagaaaagttttagaagaagtaatcttaaaattgtctccgatgaaattgctgac
aaatatgaaagaattcgaaatctcctgaaatataataattcatcaggaattatctatgtc
agaacccggaaagaagccgaagaacttaccgcttttcttcaccgaaatcagatcacgaat
gtcgatttctttcacgccgggattccggtaaaagaaaaaaatgcgaaacaaaaccgttgg
cttcaaagtcaaaaccaggttttgatctctaccaatgcattcgggatgggaatcgataaa
gataatgtgcggttcattatccatttttctcccgcggcatccatagaaaattattatcag
gaaatcggccgagctggtcgggatggctcagtttcctatgcttttctactttggaatgaa
caggaattaaagaattttgatcaaattttaatcaatcaaattccgtcgaaagcagaattt
cagaatattgtatcttacttgtattcaacctttcaaattgctgagaatgatttgccggaa
aatgtatttcagcttcatattcaaaggattcagaaatttacaaaagtgtctttagcaaag
attagaaatgttcttcagtttttgcaccatcaggaaattattttttataattatcaaaat
tctctttcatcacttgagctaaaaattgcgcctgatgaaatcgatttattgccaaaaaaa
gacgcctattttatcgaactcttattgagggctctttcgggactcaccacgcacaaagta
atgttcagcgaaaaatcactgagtaccaaaatcgagtcggatcctcatttgattaaagag
cgacttcgggaactgcagcatcagggacatctggattatatcgatggcgctttgtcgagt
gttaagtttttgaaacaccgagatcagcgggcaatagaaggaaagtactggaatcttttt
gcccagatccagaaaaacaaaattcagaaatgggaggaaatgaaattttttgtccagaat
agtgagttttgtaaaatgaaattgattttatcttatttcggtgagaaaaatgtgaaaaac
tgcggacattgctcggtttgtgaacaacagaaagaaacggttttcggacgggatgtttcg
agagaaattttagaaattttgaaaaatggtcctgcaaatgtagaagagatttccattaaa
ctgaattattttgtcaaagaaaatattttagaaaatctgattcacctgctcgattcaggt
aaagtaaaaatgctcaattttagaacatactgttacaatcacgattaa
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