Chryseobacterium salivictor: NBC122_02018
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Entry
NBC122_02018 CDS
T07515
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
csal
Chryseobacterium salivictor
Pathway
csal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NBC122_02018 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csal03019
]
NBC122_02018 (cshA)
03009 Ribosome biogenesis [BR:
csal03009
]
NBC122_02018 (cshA)
Enzymes [BR:
csal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NBC122_02018 (cshA)
Messenger RNA biogenesis [BR:
csal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NBC122_02018 (cshA)
Ribosome biogenesis [BR:
csal03009
]
Prokaryotic type
rRNA helicases
NBC122_02018 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UTP25_NTPase-like
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QBO58826
UniProt:
A0A4P6ZGH0
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All DBs
Position
2166748..2168529
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AA seq
593 aa
AA seq
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MNLFTETNLSPEILKAIGEMGFISPTEIQKQTIPFISTDTRDLIALAQTGTGKTAAFTLP
ILDMIDDGSRKIQLLVLCPTRELCLQITKDIINYSKYMRNIKTTAVYGGSSISDQIRSLR
DKPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEMLSMGFKDDLATILNETPETKQT
FLFSATMNREVERISKNYLTNPHRIVVGSLNEVKKNIKHEYYVVGYRNKKEALKRLIDAN
PNQYSILFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVDSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISIALIKPEESRKLKQIKQS
TKIEIIEKKIPTGKKIIEAQVAGVFEKLFTEHENLVEFDNELIPDLSAFTKEELVHQLLQ
LQLRDMALYYKDKDDLVDQKFNSDDRGGDRGRDRGRDRDGRGRDRDRGDRRDSGNRFSNN
RDGGSRDGGNRDSRDRDGGNRGESRDRKPRRNDGDMVRFFFNLGKRDNLKKIDMLEIINK
STEKSRKRPDIGNIEILEKFSFFEVEKSFKDEVLKGLETQKFKGKDMRAEESN
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggagaccaatttaagccctgaaatcttgaaggcaattggcgaaatg
ggctttattagcccaacagaaatccaaaaacagactattccttttatctctacagataca
cgcgatctaatcgcacttgcgcagacgggaacaggcaaaacagcagcgtttacgcttccg
attttggatatgattgacgacgggagtcgcaaaatccaattattggtgctttgtccaacc
agagaactttgtttgcagattaccaaagacattattaattattcgaaatacatgcggaac
atcaaaactacagcagtttatggtggaagcagtatcagtgatcaaatcagatcgctacgg
gacaaaccacagattattgtggggacgccaggtagggtgattgacctgatcaacagaaaa
gcccttgatttctctgaaatccagtggttggtgcttgatgaagctgatgaaatgttatca
atgggtttcaaagatgacttggcaactattttgaacgaaacaccggaaaccaaacagact
ttcttattctcggcaacgatgaatagagaggtggaaagaatttctaaaaactatttaacg
aatcctcaccgaattgtggtgggctctttaaatgaggttaagaaaaatatcaaacacgaa
tattacgtggtagggtacagaaataaaaaagaagctttgaaaagactgatcgatgcaaat
ccaaatcagtattcgattcttttctgcagaacccgtatggaaactcaggaagtcgctgac
ttcttgatgcagaacggttacgcggcagatgcacttcacggtgatttatctcaggcgcaa
cgggatacggtgatgaaaaaattccgtttgaaaaacatcgatatcctggttgcaaccgat
gtagccgcgagaggattagatgtagactcactgacccacgtgattcacttctctttacct
gatgatcctgaagtatttgttcaccgtagcggtagaacaggtcgtgccggaaaagacggt
atttcaattgcattgattaaaccggaggaatccagaaagttaaagcagatcaaacaatct
accaagattgaaattattgagaagaaaattccgaccggtaaaaaaattatcgaagcacag
gttgccggcgtatttgaaaaattatttacagaacacgaaaatctagttgaattcgacaat
gaattgattccggatttatcagcctttaccaaagaagaactggtacaccagttattgcag
ttgcagttgagagacatggcgctttattataaagataaagacgatttggtggatcagaaa
ttcaacagcgatgaccgtggcggtgaccgtggtagagatcgcggcagagaccgtgacgga
agaggccgagaccgtgacagaggagacagaagagatagcggaaaccgtttcagcaataac
cgtgatggaggaagcagagatggtggaaaccgcgattccagagatagagacggaggaaac
agaggcgagtcccgagacagaaaaccgagaagaaacgatggagatatggtaaggtttttc
tttaacttaggaaaacgggacaacctgaaaaaaattgacatgcttgaaatcatcaacaag
tcaactgaaaaatcaagaaaaagaccagatattggtaatatcgaaatcttggaaaaattc
tctttctttgaagtagaaaaatcatttaaagacgaagttcttaaaggattagaaactcag
aagtttaaaggaaaagatatgagagcagaagaatctaactaa
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