Chryseobacterium salivictor: NBC122_02855
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Entry
NBC122_02855 CDS
T07515
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
csal
Chryseobacterium salivictor
Pathway
csal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NBC122_02855 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csal03019
]
NBC122_02855 (rhlE_2)
Enzymes [BR:
csal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NBC122_02855 (rhlE_2)
Messenger RNA biogenesis [BR:
csal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NBC122_02855 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
Cas3-like_C_2
UvrD-helicase
SNF2-rel_dom
HEM4
AAA_22
NAT10_TcmA_helicase
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QBO59655
UniProt:
A0A4P6ZJR6
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All DBs
Position
3075904..3077157
Genome browser
AA seq
417 aa
AA seq
DB search
MNFTDLNLIDPIAKALKEEGYTQPTPIQQKSIPHILQGRDLLGTAQTGTGKTAAFAIPIL
QNLATKNVKSNHVKVLILTPTRELAIQIDESFKSYGRHLRLRNLVVFGGVKQAAQENALK
RGVDILVATPGRLLDFISQGIISLKHLEVFVLDEADRMLDMGFVHDVKRIIKLLPPKRQT
LFFSATFPEEINKLASSMLTNPVKVEVAPVSATADTIQQKVYFVDKDNKLDLLTHILQND
IRESVLVFSRTKHGADKIARKLQSHKISAEAIHGNKSQNARQNALSNFKSGKTRILVATD
IAARGIDIDELKYVVNFELSDVSETYVHRIGRTGRAGAEGSSISFVDGLDLVNLKNTEKL
IGKKIPVEKEHPFHTENLVAEKRDSNNKPFRPRPPQGNSASGHSKKPNNKSNFTRNR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttaccgacttaaacttaattgatcctatcgcaaaagcgcttaaggaagagggt
tacacccaaccaacacctattcagcaaaaatcgattccccacattttacaaggcagagat
ttactgggaaccgcacagaccggaaccggaaaaacagcagcatttgccattccgatcctc
cagaatttagccactaaaaacgttaaaagcaatcacgtcaaagttttgatcctaacccca
acccgggaattagccattcagattgatgagagttttaaatcgtacggaagacatttgaga
ttacgaaatctcgtggttttcggtggtgtaaaacaggccgcacaggaaaatgccctgaaa
agaggcgttgatattttagtagccacaccgggaaggttactggattttatttcacaggga
attatttcactgaagcatcttgaagttttcgttttagacgaggcagacagaatgctcgat
atgggatttgtgcacgatgtgaagagaatcatcaaattacttcccccaaaaagacaaacc
cttttcttctcggcaacgttcccggaagaaattaataaactggcgagttccatgcttacc
aatcctgtaaaagtggaagtagcacccgtttctgcaaccgcagataccattcagcagaaa
gtatattttgtagataaagacaacaaactcgatttgttaacccatattttacaaaatgac
atccgcgaatctgttttggtattttcaagaacaaaacacggcgctgataaaatcgcaaga
aagttgcaaagtcacaaaatttccgcagaagccattcacggaaacaaatcccagaatgca
agacagaatgcactttccaacttcaagtccggaaaaaccaggatcctggtggcaacagat
attgcagccagaggaatcgatatcgatgaactgaaatatgtcgttaacttcgaattgtcc
gacgtttctgaaacctatgttcaccgtatcggaagaaccggaagagccggtgcagaagga
agttcgatttcttttgttgatgggttggatcttgtcaatttaaagaatacagagaaactg
atcggtaagaaaattccggttgagaaggagcatcctttccatactgagaatttggttgct
gagaaaagagattctaacaacaaaccatttagaccaagaccaccccaaggaaattctgcg
agcggtcacagtaaaaagccgaataataaaagtaatttcacgagaaacagatag
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