Corynebacterium sanguinis: E3227_08495
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Entry
E3227_08495 CDS
T06569
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
csan
Corynebacterium sanguinis
Brite
KEGG Orthology (KO) [BR:
csan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csan03019
]
E3227_08495 (hrpA)
Enzymes [BR:
csan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E3227_08495 (hrpA)
Messenger RNA biogenesis [BR:
csan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E3227_08495 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
nSTAND3
AAA_25
ABC_tran
ResIII
T2SSE
SLFN-g3_helicase
AAA_30
PhoH
NACHT
AAA_23
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QDR78082
LinkDB
All DBs
Position
complement(1758757..1762656)
Genome browser
AA seq
1299 aa
AA seq
DB search
MNDSSHPSRGELLSRLDSLPLAEVRRFRRRLDKARAPQALRAIADDLDAAAATVAARDAA
VPDITYPEQLPVSARRDDIMELMRNHQVVVIAGETGSGKTTQIPKMLLELGRGRRGLIGH
TQPRRLAARTVAERIADELGQSVGETVGYAIRFDDRVSPTTAVKLMTDGILLAEMQRDRF
LNAYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDPQRFAEHFCDADGT
PAPIIEVSGRTYPVEIRYRPLVETVGGKETDVDMIDGVVAAIEELMREGEGDILCFFASE
RDIRDCMEALEKKHWRSVEVTPLFGRLSNAEQHRVFSPHSGRRIVLSTNIAETSLTVPGI
HYVVDTGLARISRYSTRTKVQRLPIEEISQASANQRSGRSGRVADGIAIRLYSEENFNAR
AEFTDPEILRTNLASVILQMISLRLGDISEFPFLQPPDPKSVRDGLAVLHELGATSDKER
NGAPVLTAIGRDIARIPVDPKMARMLVEANRLGVLDDVTVIVAYMTIQDVRERPLEFQAQ
ADQAHARFKDKTSDFLSALKLWDYIGESRDELSGNAFRKRMKREFLHYMRIREWYDLVRQ
LRDVEKQLGFSRAENVANERDSDAIHKSLLTGLLSNIGAREGNSKEFQGTRGTKFMVFPG
SVLAKKPPEFLMAAELVETSRLWARDVARIQPEWVETAAGGLLKHSYSEPVWSRKRSAAM
VHQTSLLYGLPIVRDRLVPYHRVDAEGARTMFIRHALIGGDWNRHHTFIDHNEAMLADAA
AVEDKVRRRGIVVDEDALYDFYDSRLPADVTTARHFDSWWKKKRHEDASYLNFNPNDLVN
DDVDASDSDFPTAWRQGSIDYALRYTFEPGDPLDGVTVEVPVPLLAGFEATGFDWLVPGL
RAELVTELIRTLPKALRRSVVPAPDFAAMALPKLTPREQPLTDDLAEVLRSIGGAGINGS
DFRPAALPPHLKITFAAIDKRGEIIDHDKDLTALKSRQSGKIRSSVSKASRTAETASAPK
WTAHTLGEVPETVTTTIDGNQVDAYPALEATANGVKVTVHPTKAAADASMLTATLTLLLR
EINVNVSQMTKGLPLRQKVAIDNYPHGGAAGLVDDARVATLRDLMVAAGGPVRSPEEFDA
LVREIKPKVSAEVRQKVVALAPVLVEYSAISQELEKWTGPAIDDMRGQLAFFLPAHAITV
HGMAYLRHVPRYIDAMRIRLEDMAIDPDRDADRQDVVAATHAYLKAKLRTLPAGREKTKD
VKDILWRIQELRVSLFAQRLGTPKPVSQRRIEKLIDAVR
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgaacgattcctcccacccctcccgcggcgagctcctctcccgcctcgatagcctgccg
cttgccgaggtgcggcggtttcgccgtcgcctggacaaggcccgcgcgccgcaggcgctt
cgcgccatcgccgacgacctcgacgccgcagccgccaccgttgcggcgcgcgatgccgcg
gtgcccgacatcacctaccccgagcagttgcccgtctctgcgcggcgcgatgacatcatg
gagctcatgcgcaaccaccaggtggtggtcatcgcgggtgagacgggttcgggcaagacc
acccagatcccgaagatgctgctcgagctggggcgcggccgccggggtttgatcggccac
acccagccgcgccggctcgcggcacgcaccgtcgcggagcgcatcgcggacgagctcggc
cagagcgtcggcgagaccgtgggctacgccatccgcttcgacgaccgcgtctcccccacc
acggcggtcaaactgatgaccgacggcatcctgctcgccgaaatgcagcgcgaccgcttc
ctcaacgcctacgacacgatcatcatcgacgaggcccacgagcgctcgcttaacatcgac
ttcctcctcggctatctcaagcagctcctgccccggcgccctgacctgaaggtgatcatc
acctctgcgacgatcgatccgcagcgcttcgccgagcacttctgcgacgccgacggcacc
ccggccccgatcatcgaggtctccgggcgcacctaccccgtcgagatccgctatcgccct
ctggtggaaaccgttggcggcaaagagaccgacgtggacatgatcgacggcgtcgtcgcg
gccatcgaggagctgatgcgcgagggcgaaggcgacatcttgtgcttcttcgcctccgag
cgcgacatccgagactgcatggaggccctggaaaagaagcactggcgctccgtggaggtc
accccgctgttcgggcggctgtccaacgccgagcagcaccgcgtgttctccccgcactcc
ggccggcgcattgtgctgtcgaccaatatcgccgagacgtcgctgacggtcccggggatt
cactacgtggtggataccggcctggcgcgcatctcgcgctactccacacgcacgaaggtg
cagcgactgcccatcgaggagatttcccaggcctcggccaaccagcgctccgggcgctcg
ggccgcgttgccgacggcattgccatcaggctctactccgaagaaaacttcaacgcccgg
gccgagttcactgacccggaaatcctgcgcaccaaccttgccagcgtgattctgcagatg
atctcgttgcgtctcggcgacatcagcgagttcccctttctacagcccccggacccgaag
tcggtgcgcgatggtctggccgtgctccacgagctcggcgccaccagcgacaaggagcgt
aacggcgcgcccgtgctcaccgcgatcggccgcgacatcgcccgcatcccggtcgacccg
aagatggcccgcatgctcgtcgaggccaaccgcctcggcgtgcttgacgacgtcaccgtc
atcgtcgcctacatgaccatccaggacgtgcgcgagcgcccgctcgagtttcaggcccag
gcggatcaggcgcacgcgcgcttcaaagacaagacctccgactttctctccgcgctcaag
ctgtgggactacatcggcgaatcgcgcgacgagctgtccggcaacgcgtttcgcaagcgg
atgaagcgcgaatttctgcactacatgcgcatccgcgagtggtatgacctggtgcgccag
ctgcgcgacgtcgaaaagcagctgggcttctcgcgcgctgagaacgttgccaacgagcgc
gactcggacgcgatccataagtcgctgctcacggggttgctgtccaacatcggggcgcgc
gagggcaattcgaaggagttccagggcacccgtggcacgaagttcatggtctttccggga
tcggtgctggcgaagaagccgccggagtttctcatggcggccgagctggttgagacctcg
cggctgtgggcgcgcgacgtcgcgcgcatccagcccgaatgggtggaaacggccgcgggt
gggctgctgaagcacagctattcggagccggtgtggtcgcgcaagcgctcggccgcgatg
gtgcaccaaacgtcgctgttgtacggcctgccgatcgtgcgcgaccggctcgtgccctac
caccgcgttgacgccgagggcgcgcgcacgatgtttatccgccacgcgctgatcggcggc
gattggaaccgacaccacacattcatcgaccacaacgaagcgatgcttgccgacgccgca
gcggtcgaggacaaggtccgccgccgcggcatcgtggtcgacgaggacgctttgtacgac
ttctacgactcgcgcctgcccgccgacgtgaccaccgcgcgccacttcgactcgtggtgg
aagaagaagcgccacgaggacgccagctacctcaacttcaacccgaacgacctggtcaac
gacgatgtcgatgcctccgactccgacttccccaccgcgtggcgccaggggtcgatcgac
tacgcgctgcgctacacctttgagcccggcgacccgcttgacggtgtgacggtggaggtc
cccgtgccgctgttggccggcttcgaggccaccggcttcgattggctcgtccccggtctg
cgcgcagagctggttaccgagctgatccgcacactgcccaaagctttacgacgttccgtc
gtccccgccccggacttcgcagccatggcgctgccgaagctcacgccgcgggagcagccg
ctgaccgacgacctcgccgaagtcctgcgctctatcggcggcgcggggatcaacggcagc
gatttccggcccgccgccctgccgccgcacttgaagatcacgttcgcggcgattgacaag
cgcggggaaatcatcgaccacgacaaggacctcacggcgcttaaaagccgccaatcaggc
aagatccgctcctcggtgtccaaggcgagccgcaccgccgagacggccagcgcacccaag
tggactgcccacacgcttggcgaggtccccgagaccgtcaccaccacgatcgacggcaac
caggtcgacgcctaccctgcgctggaggcaacggccaacggcgtcaaggtcacggttcac
ccgacgaaggcggccgccgacgcgtccatgctcacggcgacgctgacgcttctgctgcgc
gagatcaacgtcaacgtctcccagatgaccaaggggctgccgctgcgccagaaggttgcg
atagacaactacccgcacggtggtgcggcggggcttgtcgacgacgcccgcgtcgccacg
ctgcgcgacctgatggtcgccgccggtggcccggtccgctccccggaggagttcgacgcg
ctggtgcgtgaaatcaagccgaaggtcagcgccgaggtgcggcagaaggtggttgcgctc
gcgcccgtgcttgtggagtactccgcgatctcgcaggagctggagaagtggaccggcccg
gcgatcgacgacatgcgcgggcagctcgcattcttcctccccgcccacgcgatcaccgtc
cacgggatggcgtaccttcggcacgtcccgcgctacatcgacgcgatgcggattcgcttg
gaggacatggcgatagaccccgaccgcgacgctgaccgccaggacgttgtcgcggcaacc
cacgcctacctcaaggcgaagctgcgcacgctgcccgccgggcgggagaagacgaaggac
gtcaaggacattctgtggcgcatccaggagctgcgggtgagcttgtttgcccagcgcctg
ggcaccccgaagccggttagccagcgtcgcatcgaaaagcttatcgacgccgtccgctag
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