Corynebacterium sanguinis: E3227_09990
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Entry
E3227_09990 CDS
T06569
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
csan
Corynebacterium sanguinis
Brite
KEGG Orthology (KO) [BR:
csan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csan03016
]
E3227_09990
Enzymes [BR:
csan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
E3227_09990
Transfer RNA biogenesis [BR:
csan03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
E3227_09990
Prokaryotic type
tRNA splicing ligases
E3227_09990
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDR78337
LinkDB
All DBs
Position
2068519..2069742
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AA seq
407 aa
AA seq
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MARNKRGRPSSKNRFSSRPVNTNHHVEVFASLVDDNVTEQANQLARLPFVHPHVALMPDA
HYGMGSAVGTVFGTIGAVIPAAVGVDIGCGMIGVRTGFTATDLAGGDLTRLRDAIEAAIP
LSPGNYNEWILGGSAEARTRELAELAEDTGVDLSHSPKWRQQLGSLGGGNHFIELCLDEE
DRVWMFLHSGSRGVGNKIAQKHIATAQEQCDKHWVLLENRDLAYLVEDTAEFDSYIADLA
WAQRFAWLNREEMMDRFARVLGEFVGAEVAEAERINCHHNYTQVEEHYGQKVWLTRKGAI
RADEGVKALIPGSMGTSSYVVSGKGFAPALRSAPHGAGRRFSRTEARKRFTAADLDERMG
GIVYRPGDAWVDEIPDAYKDIDQVMVDAEKLVSVEHKLRQILNVKGT
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcaacaagcggggcagacccagtagtaaaaaccggttctcctcgcggcccgtt
aataccaaccaccacgtcgaggttttcgcctcgcttgtcgacgacaacgtcaccgagcag
gccaaccagctcgcccgcctgccctttgtccacccgcacgtcgcgctgatgccagacgca
cactacggcatgggctccgccgtcggcaccgtcttcggcaccatcggggccgtgattccg
gctgccgtcggcgtcgacatcggctgcggcatgatcggcgtgcgcaccggattcaccgcc
accgacctggctggaggcgatctcacccgcctacgcgacgcgatcgaggcggcgatcccg
ctgtcccccggcaactacaacgaatggatcctcggcggcagcgccgaggcacgcacccgg
gagctcgccgagctggccgaagacacaggcgttgacttgtcgcactccccgaagtggcgc
cagcagctcggctcgctcggcggcggcaaccactttatcgagctgtgcctcgacgaggag
gaccgagtgtggatgttcctgcattccggctcgcgcggggtgggcaacaagattgctcag
aagcacatcgccacggcccaggagcagtgcgataagcactgggtactgctggagaaccgc
gaccttgcgtacctcgtggaggacacggccgagttcgactcctacatcgccgatctcgcc
tgggcgcagcgcttcgcatggctcaaccgcgaggagatgatggaccgcttcgctcgtgtg
ctgggagagttcgtcggtgccgaggtggcagaggccgagcggatcaactgccaccacaac
tacacccaggtggaggagcactacgggcagaaggtgtggttgacccgcaagggcgcgatc
cgcgccgacgagggcgtcaaggcgctcatccctggctcgatgggaacctcgagctacgtt
gtgtcgggcaaaggcttcgccccggcgctgcgctcggcaccgcacggcgcgggccgacgc
ttctcgcgaaccgaggcccgcaaacggttcaccgccgcggacctggacgagcgcatgggc
gggattgtctaccgccccggcgacgcgtgggtggatgagatcccggatgcctacaaggac
atcgaccaggttatggtggacgcggagaagctggtcagcgtcgagcacaagctgcgccag
atcctcaacgtcaagggcacctag
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