Camelina sativa (false flax): 104699156
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Entry
104699156 CDS
T05044
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104699156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104699156
Spliceosome [BR:
csat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
104699156
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
PRP4
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_EIPR1
NBCH_WD40
ANAPC4_WD40
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_IFT122_1st
eIF2A
WD_LRWD1
Beta-prop_SPT8
WD40_like
Nbas_N
Motif
Other DBs
NCBI-GeneID:
104699156
NCBI-ProteinID:
XP_010412795
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Position
6:complement(17257921..17259225)
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AA seq
374 aa
AA seq
DB search
MDPNTMQDLLVMRPTAVPTNDKAVRDRLRRLGKPITLFGEQGMERRSRLSNLMGMLTVEK
LLETHVEEEDAALKEQAYDQVPVYPFFTEGPKELREARIEIAKFSIKRAAVRNQRAKRQR
DEEAKLALNHARDMVLECSNFGEDRPLTGCSFSRDGKILATCSLSGVTNLWEMPQVTNKI
AVLEDKKERATDVVFSPVDDCLATASADRTAKLWKTDGTLVRTFEASCGLDSLARVWDLR
TGRSILVFQGKTKPLLSVNFSPNGYHLASGGEDNQCRIWDLRMRESLYTIAAHSNLVSQV
KYEPQAGHFLATASYDKKVNIWSGRDFSLVKSLAGHESKVASLDITPDSSCIATVSHDRT
IKLWTRSGNGEDES
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggatcccaacacaatgcaagatttgttggtaatgcgtcctactgctgttccaacgaat
gacaaagctgttagggatcgccttagacgacttgggaagccaattaccctgtttggagaa
caaggaatggagagaagatctaggttgagtaaccttatgggtatgcttactgtggaaaaa
ctacttgaaactcacgtcgaagaagaagatgcggctctaaaagagcaagcgtatgatcaa
gtacctgtataccctttttttaccgagggtccaaaggaactgagagaggctagaatagaa
attgccaagttttctatcaagagagcagctgtcaggaatcagcgtgcaaagcggcagagg
gatgaagaggctaagttggctttaaatcatgctagagacatggtcctggagtgcagtaat
tttggagaggatcgtcctcttaccggctgttctttctctcgcgatggaaagatacttgcc
acatgttctctgagtggagttactaatttgtgggagatgcctcaagttacaaacaagatt
gctgtcttggaggacaaaaaggaacgtgcaactgatgtagtgttctcccctgttgatgac
tgtctagcaactgcttctgctgatcgaactgcaaagctgtggaaaactgatggaacacta
gtacgaacttttgaagcttcttgtgggcttgattcactcgcacgggtttgggatctccgc
actggtaggagtattcttgtcttccaaggaaaaaccaaacctctactctcagtgaacttc
tctcctaatggttatcacttggcatccggtggtgaggataatcaatgccgtatttgggat
ctaaggatgagagagtcattgtacactatagcagctcattctaaccttgtgtctcaagtg
aagtatgaaccacaagcaggtcacttcttggccactgcctcatacgacaagaaagtcaac
atatggtcgggaagagatttctcgctcgttaaaagcttagcaggacatgagtcaaaagtc
gcctctctcgatatcactccagatagctcgtgtattgcaactgtatcacatgaccgcacc
atcaagctttggacgagaagtggaaatggcgaagatgaatcataa
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