KEGG   Camelina sativa (false flax): 104700159
Entry
104700159         CDS       T05044                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
csat  Camelina sativa (false flax)
Pathway
csat04120  Ubiquitin mediated proteolysis
csat04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    104700159
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    104700159
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:csat04121]
    104700159
Enzymes [BR:csat01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     104700159
Ubiquitin system [BR:csat04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    104700159
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     104700159
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_DCAF4 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_HPS5 WD40_RFWD3 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_EML WD40_like Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Beta-prop_SCAP WDR90_beta-prop_4th YbfN YpoC Beta-prop_IFT122_2nd Baculo_p24
Other DBs
NCBI-GeneID: 104700159
NCBI-ProteinID: XP_010413924
LinkDB
Position
7:complement(3588150..3593766)
AA seq 562 aa
MCQKLPRPWISFGKHYKGQGCDVSIKEVDSLLTLLSERKRKMEQEEAERNMQILLDFLHC
LRKQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPHE
KNHSGFNSNSLSIRGGNLLGNYQNKKVEGKPQGSSHGLPKKDALSGSDSQSLNQSTVSMA
RKKRIHAQFNDLQECYLQKRRQLVDQPNSKQENDKSVVRREGYSNGLADFQSVLTTFTRY
SRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADMQCP
IVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSR
TEPSMLVSGSDDCKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNYIAVGSADHHIHYY
DLRNISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEK
NFVGLTVNSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEEEAGSYFISAVCWK
SDSPTMLTANSQGTIKVLVLAA
NT seq 1689 nt   +upstreamnt  +downstreamnt
atgtgtcaaaaactgcctcgcccttggatcagtttcgggaagcattacaaaggacagggt
tgtgatgtgtcaattaaggaggttgatagtcttcttactcttctttcggaaaggaagaga
aaaatggaacaggaagaagctgagaggaacatgcagatactcttggactttttacattgt
ttaaggaagcaaaaagtcgatgaactaaatgaggtgcaaactgatctccagtatatcaaa
gaggatataaatgccgttgagagacatagaatagatttataccgagctagagacagatat
tctgtgaagttgcggatgctcggagatgatccaagcacaagaaatgcatggccacatgag
aagaaccacagtggtttcaactccaattctctgagcataagaggaggaaatttgttaggc
aattatcaaaacaaaaaggtagagggaaagccacaaggaagctctcatgggctaccaaag
aaggacgcactgagtgggtcagattcccaaagtttgaatcagtcaactgtctctatggct
agaaagaaacggatccatgcgcagttcaatgatctacaagaatgttacctccaaaagcgg
cgtcagttggtagaccaaccaaatagtaaacaagaaaatgataagagtgtagtacggagg
gaaggctatagcaacggccttgcagattttcaatctgtgttgactaccttcactcgttac
agtcgtctaagagtcatagcagaaatccggcatggggatatatttcattctgccaacatt
gtatcaagcatagagtttgatcgtgatgatgagctgtttgccactgctggtgtttctaga
tgtataaaggtttttgacttctcttcggttgtaaatgaaccagcagatatgcagtgtccg
attgtggagatgtcaactcggtctaaacttagttgcttgagttggaataagcatgagaaa
aatcatatagcaagcagtgattatgaaggaatagtaacggtgtgggatgtaactactagg
cagagtcttatggagtatgaagagcacgagaaacgtgcatggagtgttgacttttcacga
acagaaccatcaatgctcgtatctggtagtgatgattgcaaggttaaagtttggtgcaca
aggcaggaagcaagtgtgcttaatattgatatgaaagcaaacatatgttgtgtcaagtac
aatccgggctcaagcaactacattgcggtcggatcagctgatcatcacatccattattac
gatctaagaaacataagccaaccacttcacgtcttcagtggacacaagaaagcagtttct
tatgttaaatttttgtccaacaacgagctcgcttctgcatccacagatagcacactgcgc
ttatgggatgtcaaagacaacttgccagttcgaaccttcagaggacacactaatgagaag
aactttgtgggtctgacagtaaatagcgagtatcttgcctgtggaagcgagacaaacgaa
gtatatgtatatcacaaggagatcacgagaccggtaacttcgcacagatttggatcacca
gacatggacgatgcagaggaagaggcaggttcctactttataagtgcggtttgctggaag
agtgatagtcccacgatgctgactgcgaatagtcaaggaaccatcaaagttctggtactc
gctgcgtga

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