Camelina sativa (false flax): 104700265
Help
Entry
104700265 CDS
T05044
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03440
Homologous recombination
csat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104700265
03450 Non-homologous end-joining
104700265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
csat03032
]
104700265
03400 DNA repair and recombination proteins [BR:
csat03400
]
104700265
DNA replication proteins [BR:
csat03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
104700265
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
104700265
BRCA1-C complex
104700265
NHEJ (non-homologous end-joining)
MRX complex
104700265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
SbcC_Walker_B
SMC_N
Rad50_zn_hook
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
104700265
NCBI-ProteinID:
XP_010414056
LinkDB
All DBs
Position
7:complement(4372956..4381183)
Genome browser
AA seq
1323 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVVTFFRPLTLIVGANGAGKTTIIECLKVSCTGELPPNAR
SGHSFIHDPKVAGETETKAQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEVALLFSYKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTL
KKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTFKLKLENLQTLKDAAYKLRESIAQDQE
RTESSKVQMLELETSIQKVDAEVHNKEMMLKDLRKLQDQVSRKTAERSTLFKEQQRQYAA
LPEENEDTIEELKEWKSKFEERIALLETKIRKMEREMDDTQTTISSLHNAKTNYMLEISK
LQTEAEAHMLLKNERDSTIQNIFSRHNLGNVPSTPFSPEVVLSLTNRIKSRLGELEMDLL
DKKKSNETALSTAWDCYMDANDRWKSIEAQKRAKDEIKMGISKRIEEKENERDTFEFEIS
SVDVKQTDEREKQVHLELERKTKQNSERGFESKIEQKQHDIYSIEHKIKTLNRERDVMAG
DAEDRVKLSLRKTEQENLKKKNKKIIDECKDRIRVVLKGRLPPEKDMKKEIVQALRSIER
EYSELSLKSREAEKEVNMLQMKIQEVNNSLFKHKKDTESRKRYIESKLQALKQESVTIDA
YPKLLESAKEKRDEHKRKYNMATGMREMFEPFEEIARSRHLCPCCERTFTSDEEDSFVKK
QRANASSTVGHLKMLAVESSNADSVFQQLDKLRAVFEEYSKLTSEVIPLAEKTLQEHTEE
LDQKSQALDDVLGISAQIKADKDAIEALVQPLENTDRIFQEIVSYQKQIEDLEYKLDFRG
LGVKTMEEIQSELNSLQSSKDILHDELEKLRDEQIYMERDISCLQARWHAVREEKAKAAN
LLRDVTKAEEDLERLAEEKSQLDLDVKYLTEALGPLSKEKEQLLSDYNDMKVRRNQEYEE
LAEKKRNYQQEVEALLKASSKINEYHELKKGERLNDIQEKQRLSETQLQSCEARKNELAG
ELNRNKDLMRNQDQLRRNIEDNLNYRTTKAEVEKLTREIESLEEQILNIGGIPAVEAEMV
KISRERERLLSELNRCRGTVSVYESSISKNRVELKQAQYKDIDKRHFDQLIQLKTTEMAN
KDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDMDYIRIHSDSEGAGTRSYS
YKVLMQTGDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSE
SLAGALLRIMEDRKGQENFQLIVITHDERFAQMIGQRQHAEKYYRVAKDDMQHSIIEAQE
IFD
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggtcgataaaatgctgatcaagggtattagaagcttcgacccagaaaataag
aacgtcgttactttcttcagacctttaaccctaatcgtcggagccaacggtgccggcaaa
actacgattatagagtgcttgaaggtatcttgtacaggagagttaccaccgaacgcgagg
tctggtcacagcttcattcatgaccctaaggttgctggggaaacggagacaaaagcacaa
attaagctgagattcaagacagctgcagggaaggatgtggtttgtataaggtcatttcaa
ttgacacagaaggcttcaaagatggagtacaaggcaattgagagtgtgcttcaaaccatt
aatcctcacactggagaggttgcacttctttttagctataaagtatgtctcagctacaga
tgcgctgacatggatagggagataccagctttgatgggtgtgtccaaagctattttagaa
aacgtcatatttgtgcatcaagatgagtctaactggccactgcaagatccttctactttg
aaaaagaagtttgatgacattttctcagctaccagatatacaaaggctctggaagttatt
aagaaacttcacaaggatcaagctcaggaaataaaaacttttaagttaaagttggaaaat
ctgcagaccttgaaagacgcagcttataagcttcgtgagagcattgctcaagatcaagaa
aggacagagtcttctaaagttcagatgttggaactggaaaccagcattcagaaagtcgat
gctgaagttcataataaggaaatgatgttaaaagatctgagaaagctacaggaccaagta
tcaagaaaaactgccgagaggagcaccttgtttaaggagcagcagagacagtatgcagca
ttacctgaggaaaatgaagataccattgaagaattgaaagaatggaaaagcaagtttgaa
gaaagaattgctcttttggagaccaaaatacgaaaaatggagagagagatggatgacaca
caaactacaatttcttcgcttcacaatgcaaaaactaactatatgctggagatcagcaag
ctacaaacagaagctgaagctcatatgctgctgaagaatgaaagagattctaccatccag
aatattttttctcgtcacaatttaggaaatgttcctagtacccccttcagtccagaggta
gttttgagtctcacaaatcgaataaaatcaagactgggtgaacttgagatggacttgctt
gataagaagaaatcaaatgaaactgctctaagtacagcttgggattgctatatggatgct
aatgaccgttggaaaagcatcgaagctcagaaacgagctaaagatgaaattaagatgggc
atatcaaaacgcatagaagagaaagaaaatgagcgtgatacatttgaatttgaaatttcc
tccgtggatgttaaacaaactgatgaaagagagaaacaagtgcatcttgagcttgagaga
aagactaaacagaattctgaaagggggtttgaatccaaaattgaacagaaacagcatgat
atatacagcatagaacataaaattaaaacactgaatcgagaaagggacgttatggctggt
gatgctgaggatagagtgaaattgtctttacggaagacggaacaggagaatcttaagaag
aaaaacaaaaagataatagatgagtgcaaagatcgaattagagtggtgctgaaggggaga
ttgccacccgagaaggatatgaagaaggaaatagttcaagctctgaggtcaattgaaagg
gaatatagtgagctgagtttgaaatcccgggaagcagaaaaggaggtcaacatgttgcag
atgaagatacaagaagtaaacaatagtctattcaagcacaagaaggatacagaatcaagg
aagagatacattgagtccaagctccaggccttaaaacaggaatcagttaccattgatgct
tatcccaaattgttggagtcagctaaggagaaaagagatgaacataaaagaaagtataac
atggcaactggaatgcgcgagatgtttgaaccttttgaggagatagcacggtcacgtcat
ctttgtccttgctgcgagcgcacttttacatctgacgaagaggatagctttgttaagaag
caaagggcaaatgcttcaagcaccgtggggcatcttaaaatgttagcagtggagtcttcc
aatgctgactctgtatttcagcagctggacaaactacgggcagtttttgaagagtactcg
aaactaactagtgaagttattcctctcgcggagaaaactttgcaagagcatacagaagag
ctggaccaaaagtctcaagctctcgatgatgtattaggaatctcagcccaaataaaagct
gacaaagacgcaattgaagcactggtgcagcccctggaaaatactgataggatctttcag
gaaatcgtatcataccaaaagcaaatagaagatcttgaatataagctcgatttcaggggt
cttggggttaaaactatggaagaaatccagtcagaattaaatagcctccaaagcagcaag
gatatattgcacgatgagctggagaaacttagagatgaacagatttacatggaacgtgat
atatcatgcctccaggccagatggcatgcagtaagggaggagaaggctaaggcagccaat
ttgttacgcgacgttacaaaggcagaagaagacctagagcgtttagccgaggagaaaagt
caactggaccttgacgtgaagtatttgaccgaggcacttggcccgttgtccaaggaaaag
gagcagttgctgagtgactacaatgatatgaaggttagacgtaatcaagagtatgaagaa
ctggctgagaaaaagagaaactaccaacaggaagttgaggcattactcaaggccagttct
aagataaatgagtatcatgaattgaagaaaggagagcgcttaaatgatattcaagagaag
cagcggttatccgaaactcagcttcagagctgtgaagctagaaagaatgaacttgcaggt
gaactgaacagaaataaagacttgatgcggaatcaagatcaactgagaagaaatatagag
gataacttgaactaccggacaacaaaagcagaagttgagaaacttacacgtgaaattgaa
tcattggaagagcaaatactgaatattggtgggattcctgcagttgaagctgaaatggta
aagatatcacgggaaagggaaagacttctttcagagctgaaccggtgtcgtggaacagtg
tctgtttacgagagcagtatttcaaaaaacagagtagagctaaaacaggcacaatacaag
gacatagataagcggcactttgatcaactgatccagctaaagacaactgaaatggcaaat
aaagacttggatagatactacaatgcccttgacaaagcactaatgcgattccacacaatg
aaaatggaggaaataaataagattataagggaactgtggcagcagacatacagaggtcaa
gatatggattacatacgaatacactcagattccgaaggtgcaggcacccgctcttacagc
tacaaggttcttatgcagactggtgatacagaacttgaaatgagaggaagatgcagcgca
ggtcaaaaggttcttgcttcattgataataaggttggctttagccgagacattttgctta
aactgtggaatattagcccttgacgagccaactacaaacctggatgggcccaattcagaa
tctcttgcaggagctcttcttaggatcatggaagacaggaagggccaagagaatttccaa
ctcatagtcattacccatgatgaacgcttcgctcaaatgattggccaacggcaacacgct
gaaaagtattaccgggtcgcaaaagatgatatgcaacacagcataatcgaggctcaagag
atctttgattga
DBGET
integrated database retrieval system
