Camelina sativa (false flax): 104700840
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Entry
104700840 CDS
T05044
Name
(RefSeq) phytochrome B-like isoform X1
KO
K12121
phytochrome B
Organism
csat
Camelina sativa (false flax)
Pathway
csat04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
104700840
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Gene cluster
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HisKA
HATPase_c
PAS_4
PAS_9
PAS_8
PAS_3
sCache_3_2
Motif
Other DBs
NCBI-GeneID:
104700840
NCBI-ProteinID:
XP_010414738
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Position
1:21550790..21555915
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AA seq
1173 aa
AA seq
DB search
MVSGGTGGGGGEGAASSSHTANNNNKRRGGEQAQSSGTKSLRPQESSMSKAIQQYTVDAR
LHAVFEQSGGSGKSFDYSQSLKTTTYCSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDES
SFGIIGYSQNAREMLGLMPQSVPSLEKPEILAMGTDVRSLFTSSSSILLERAFVAREITL
LNPVWIHSKYTGKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQ
SLPGGDIKLLCDTVVESVRDLTGYDRVMVYKFHEDEHGEVLAESKRDDLEPYIGLHYPAT
DIPQASRFLFKQNRVRMIVDCHATPVLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMG
SIASLAMAVIINGNDEDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFG
LQLNMELQLALQMSEKRVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGASFLYHGK
YYALGVAPSEVQIRDVVEWLLANHADSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITK
RDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSQPWETAEMDA
IHSLQLILRDSFRESEAAMNSKTVDGAVQPYKDMAGEQGIDELGAVAREMVRLIETATVP
IFAVDAGGCINGWNAKIAELTGLSVEEAMGKSLVSDLIYKENEETVSKLLSRALRGDEDK
NVEVKLKTFSPELQGKAVFVVVNACSSKDYLNNIVGVCFVAQDVTGQKIVMDKFINIQGD
YKAIVHSPNPLIPPIFAADENTCCLEWNTAMEKLTGLSRSEVIGKMLVGEVFGSSCRLKG
PDALTKFMIVLHNAIGGQDTDKFPFPFFDRNGKFVQALLTANKRLSLDGKVIGAFCFLQI
PSPELQQALAVQRRQDTECFTKAKELAYICQVIKNPLSGMRFANSLFEATDLNEDQKQFL
ETSVSCEKQISRIVGDMDLESIEDGSFELKGAEFFLGSVINAIVSQAMFLLRDRGLQLIR
DIPEEIKSVAVYGDQIRIQQLLSEFLLSIIRYAPSQEWVEIHLSQVSKQMANGFATIRTE
YRSLFFVFRMACPGEGLPPELVRDMFHSSRWTSPEGLGLSVCQKILKLMNGEVQYIRESE
RSYFLIILELPDPRKRPLSTASGSGDMMLTMPY
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggtttccggaggtaccggcggcggcggcggagaaggagcggcgtcgtcaagtcacact
gctaataacaacaacaaacggagaggaggagaacaagctcaatcttctggaacgaaatcc
ctcagaccacaagaatcctcaatgagcaaagcgattcaacagtacaccgtcgacgctagg
ctccacgccgtcttcgaacaatccggcggatcaggcaaatccttcgactactcccaatca
ctcaaaacgacgacgtactgttcctccgtccctgagcagcagatcaccgcttatctctcc
cgaatccagagaggaggttacattcagcctttcggatgcatgatcgccgtcgacgaatcg
agcttcggtatcatcggttacagccaaaacgctagggaaatgctggggcttatgcctcag
tctgttcctagtcttgagaagcctgagattctagccatggggactgacgtgaggtctttg
ttcacttcctccagctcgatcctactcgagcgtgctttcgtggctcgggagatcacgttg
ttgaatccggtttggatccattccaagtatactggtaaaccgttttacgccattctccat
aggattgatgttggtgttgtgattgatttagagccagctagaactgaagatccagcgctt
tctattgctggtgcggttcagtctcagaaactcgcggttcgtgctatttcgcagttgcag
tctctccccggtggagatattaagcttttgtgtgacactgttgttgagagtgtgagggac
ttgactggttatgatcgtgttatggtttataagtttcatgaagatgagcatggagaagtt
ttagctgagagtaagcgagacgatttggagccttatattggactgcattatccagctact
gacattcctcaagcgtcacgtttcttgtttaagcagaatcgtgttcgaatgattgtggat
tgtcatgccacgccggttcttgtggtgcaggacgataggctgactcaatctatgtgcttg
gttggttctactcttagggctcctcatggttgtcactctcagtatatggctaacatgggg
tctattgcgtctttagctatggcggttataattaatggaaatgatgaagatgggagcaat
gtagctagtgggagaagctcaatgaggctttggggtttagttgtttgccatcacacttct
tctcgctgcataccgtttccgctaaggtatgcttgtgagtttctgatgcaggcttttggt
ttacagttgaacatggaattgcagctagctctgcagatgtcagagaaacgtgttttgaga
acgcagactctgttatgcgatatgcttctgcgtgactcgcctgctggaattgttacacag
agtcctagtatcatggacttggtgaaatgtgacggtgcatcatttctttaccacggcaag
tattacgcgttgggtgttgctcctagtgaggttcagataagagatgttgtggagtggttg
cttgcgaatcacgcggattcaactggattaagcactgatagtttaggcgatgccgggtat
cctggtgcagctgccttaggggatgctgtgtgcggtatggcagttgcatatatcacaaaa
agagactttcttttctggtttcgatctcacactgcgaaagaaatcaaatggggaggcgct
aagcatcatcccgaggataaagatgatgggcaacgtatgcatcctcgttcatcctttaaa
gcttttcttgaagttgttaagagccgaagtcagccatgggaaactgcggaaatggatgcg
attcattcgctccagcttattctgagagactcttttagagaatctgaggcggctatgaac
tctaaaactgtggatggtgcggttcagccatataaagatatggcaggagagcaagggatt
gatgagttaggtgcagttgcaagagagatggttaggctcatcgagaccgcaactgttcct
atattcgctgttgatgccggaggctgcatcaatggatggaacgctaagattgcagaactg
acaggtctctcagttgaagaagctatgggcaagtctctggtttctgatctaatatacaaa
gagaatgaagaaactgtcagtaagcttctttctcgtgctttgagaggggacgaggacaag
aatgtggaggttaagctgaaaactttcagccctgaacttcaaggcaaagcggtttttgtg
gttgtgaatgcgtgttccagcaaggactacttaaacaacattgtaggcgtctgttttgtt
gcacaagacgttactggtcagaaaatcgtaatggataagttcatcaacatacaaggagat
tacaaggctattgtccatagcccaaacccgctaatcccgccaatatttgctgctgacgag
aacacttgctgcctggaatggaatactgcgatggaaaagcttacgggtttgtcccgcagt
gaagtgattgggaaaatgctcgttggggaagtgtttgggagcagttgcaggctaaagggt
cctgatgctttaaccaagttcatgattgtattgcataatgcgattggtggccaagacacg
gataagttccctttcccgttttttgaccgaaatgggaagtttgttcaggctctattgact
gcaaacaaacggcttagcctcgacggaaaggttattggggctttctgcttcttgcagatc
ccgagtcctgagctgcagcaagctttagcagtccaacggagacaggacacagagtgtttc
acgaaggcgaaagagttagcttatatttgtcaggtgataaagaatcctttgagcggtatg
cgtttcgcgaactcattgtttgaggccacggacttgaacgaggatcaaaagcagttcctt
gaaacaagtgtttcttgtgagaaacagatctcaaggatcgtcggtgacatggatcttgaa
agcattgaagacggttcgtttgagctaaagggagcggagtttttcctcggaagtgtcata
aacgcgattgtaagccaagcgatgttcttattaagggacagaggtcttcagctgatccgt
gacattccagaagagatcaaatcagtagctgtttatggagaccagataaggattcaacaa
ctcctgtctgagtttctgctgagtataatccggtatgcaccatctcaagagtgggtggag
atccatttaagccaagtttcaaagcaaatggctaatggattcgccactatccgcacagaa
tacaggtctttattttttgttttcagaatggcgtgtccaggtgaaggtctgcctccagaa
ctggtccgagacatgttccacagcagcaggtggacaagccctgaaggtttaggtctaagc
gtatgtcaaaagatattaaagctaatgaacggtgaggttcaatacatccgagaatcagaa
cgatcatatttcctcatcattctcgaactccctgatcctaggaaacgcccattgtcaacc
gcgagtggcagcggtgacatgatgttgacgatgccatattag
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