Camelina sativa (false flax): 104701138
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Entry
104701138 CDS
T05044
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104701138
03036 Chromosome and associated proteins [BR:
csat03036
]
104701138
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
104701138
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
104701138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Tex_central_region
Spt6_S1
HHH_9
HTH_44
HHH_3
Tex_N
S1
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
104701138
NCBI-ProteinID:
XP_010415081
LinkDB
All DBs
Position
7:complement(13916687..13926614)
Genome browser
AA seq
1629 aa
AA seq
DB search
MPRNAISDDEDDHELEDEDGEPVLGDEHGDNDDEEDDDDDVGNEYENDGFIVNDDDEEEE
QEEDDERQDSDEERQKKKKRRRKKDEDLDEDDYLLLQDNNVKIQKRKYKRLKKAQREREN
GQGGSSDDEFAGSGGARRSAEDKIKDRLFDDIDADPPDDVGDEEDLVVGEDVVGSDDEMA
DFIVDEDDGLGPPKRGGLKKKKFRQGSDISAMRDANEIFGDVDELLTIRKKGLASSERME
RRLEDEFEPTVLSEKYMTGQDDEIRQLDIPERMQISEESTGSPPVDELSIEEESNWIYTQ
FTSLLKKSDGQGVHSFEGRGFSVNKDDIAKFLELHHVQKLEIPFIAMYRKEQCRSLLDTA
DVDGANQDKKPETKWHKVFWMIQDLDKKWLLLRKRKMALHGYYTKRYEEESRRVYDETRL
NLNQYLFESVIKSLNVAETEREVDDVDSKFNLHFPPGEIGVDEGQYKRPKRKSQYSICSK
AGLWEVANKFGYSAEQLGLALSLEKLVDELEDAKETPEEMAMNFVCAMFEDPQAVLKGAR
HMAAVEISCEPSVKKYVRGIYMENAVVSTSPTADGNTVIDSFHQFSGIKWLREKPLSKFE
GAQWLLIQKAEEEKLLQVTFKLPENHMNRLISDCNEHYLSVGVSKYAQLWNEQRKLILED
ALHTFLLPSMEKEARSLLTSRAKSRLLLEYGQALWNKVSAGPYQKKEMDISSDEEVAPRV
MACCWGPGKPPNTFVMLDSSGEVLDVLYAGSLTLRSQNVNDQQRKKNDQDRVLKFMMDHQ
PHVVALGAVNLSCTRLKDDIYEVIFQMVEEKPRDVGHGMDDLSIVYVDESLPRLYENSRI
SGEQLPQQSGIVKRAVALGRYLQNPLAMAATLCGPGREILSWKLHPLEHFLQVDEKYGMV
EQVMVDITNQVGIDINLAASHEWFFSPLQFISGLGPRKAASLQRSLVRAGSIFVRKDLIM
HGLGKKVFVNAAGFLRIRRSGLAASSSQFIDLLDDTRIHPESYSLAQELAKDIYDQDVRG
DSNDDEDAIEMAIEHVRDRPGSLRKVVLDEYLASKKRENKKETYSNIMRELSCGFQDWRI
PFKDPSPDEEFYMISGETEDTIAEGRIVQASVRRLQGGRAICVLDSGLTGMLTKEDFSDD
GRDIVELSERLKEGDILTCKIKSIQKQRYQVFLICKESEMRNNRHQHNQNVDAYYHEDRN
SLQLVKEKARKEKELVRKHFKSRMIVHPRFQNITADQATEYLSDKDFGESIVRPSSRGLN
YLTLTLKIYDEVYAHKEIVEGGKENKDITSLQCIGKTLKIGEDTFEDLDEVMDRYVDPLV
SHLKTMLNYRKFRKGTKSEVDDLLKIEKGENPSRIVYCFGISHEHPGTFILSYIRSTNPH
HEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPLQESVPSIRSVAAMVPMRSPADRGS
SGGSGWGSSHNEGGWKGNSDRSGSGRGGDYRNGGGRDGHPSGAPRPYGGRGRGRGRGRRD
HMNGDRQDGNGDWGNNDTGTGDGGWGSSTGKKSSGAGGWGNESGGGGGSTGGWGSESAEK
KSDGAGAWGSGSGGGDSGSGGWGNDSGGKKSSEDGGWGNEAGGKKSDGEGGWGNESSSQK
SGGGGGGGW
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atgccgaggaacgcgatttctgacgatgaagatgatcatgagctcgaggatgaggacgga
gagccagttctgggagatgaacacggtgataacgatgatgaagaagatgatgatgatgac
gttgggaatgagtatgagaatgatgggttcatagtgaatgatgacgacgaggaagaagaa
caagaagaggacgacgaaaggcaagatagcgatgaggaaaggcagaaaaagaagaagagg
cgaagaaaaaaggacgaagatcttgatgaagatgattatctgcttctccaagataacaat
gtcaaaatccaaaagaggaaatataagcggttgaaaaaagctcaaagggaaagggaaaat
ggtcaggggggatcatctgatgatgagtttgctgggagtggtggagctagaagaagtgct
gaggataagatcaaagacaggctgtttgatgatattgatgcagatccacctgatgatgta
ggcgatgaggaagacctagttgtgggagaagatgtagttggtagcgatgatgaaatggca
gattttattgtagatgaagatgatgggcttggtcctcctaagaggggaggcttaaagaaa
aagaaatttaggcagggatcagatattagtgctatgcgagatgctaatgaaatatttggt
gatgttgatgaacttttgactattcgcaaaaagggtttggcatctagtgaaagaatggaa
agaaggctcgaagatgagtttgaaccaactgttctctctgagaagtacatgacagggcaa
gatgatgaaatccgccagcttgatattcctgagagaatgcagatatctgaagaaagcact
ggaagccctcctgtagatgagcttagcattgaggaagagagtaattggatatatacccaa
tttacttctctacttaaaaaatctgatggacaaggagttcatagtttcgaagggcgaggt
ttctcggttaacaaggatgacattgcaaaatttttggagctacatcatgtgcagaaatta
gagataccgtttatagcaatgtaccgaaaggagcaatgccggagcttgttggacactgct
gatgttgatggtgccaatcaagacaagaaacctgagactaagtggcataaggtcttctgg
atgattcaggacttggataagaaatggctccttcttcgaaaaaggaaaatggcgttgcat
ggttactatacaaaacgttacgaagaagagtctaggagggtctatgacgaaactaggctt
aatctaaatcagtatctttttgaatcagtcattaagtctcttaacgttgcagaaacagaa
agagaagttgacgatgtagattccaagttcaacttgcattttcctcccggtgaaattggt
gttgatgaagggcagtacaagagaccgaaaagaaaatcacaatatagcatctgcagcaaa
gcggggctctgggaggttgccaacaaatttgggtatagtgctgagcaattgggacttgca
ttgtccctcgaaaaattggttgacgagcttgaggacgcaaaggaaacaccagaggagatg
gcaatgaactttgtgtgcgcaatgtttgaagaccctcaagctgttctgaagggtgcacgg
catatggctgcagttgagataagttgcgagccatcagtcaaaaagtatgtccgtggcatt
tatatggagaatgcagtagtctcaacaagtccaacagcagatggaaatacagtaatagat
tcattccatcagttttctgggatcaagtggttacgtgaaaagccattgagcaagtttgag
ggtgcacaatggcttctcattcagaaggcagaagaggagaaacttcttcaagtaaccttc
aagctgcctgagaatcacatgaataggctaattagcgactgcaatgaacattatctaagt
gtcggtgttagtaagtatgctcaactctggaatgagcaaagaaagttaattctggaggat
gcacttcatacttttcttttgccatcaatggagaaagaagcaagatccttgctgactagc
agagcgaagagtcggttgcttttagagtatggacaggctttgtggaacaaagtttctgca
gggccatatcaaaagaaagaaatggacattagctcagatgaggaagttgcgcctagggtc
atggcatgttgttggggacctggaaagccaccaaatacgtttgtgatgctggattcatcg
ggagaggtgcttgatgtactctatgctggatccctcacattacgatctcaaaatgtcaac
gaccagcaacgtaaaaagaatgaccaggatcgtgttttaaagtttatgatggaccaccaa
ccgcatgttgtggctttaggagctgtcaatttgtcttgtactcgcctgaaggatgatatt
tatgaggtcatattccagatggtggaggaaaagcctagagatgttggacatggaatggat
gatttaagcattgtttatgtggatgaatcacttcctagactatatgaaaattctcgaatc
tcgggtgaacagctacctcagcagtcagggatcgtgaaacgtgcagttgctcttggacgc
tatctccaaaatccactagcaatggctgccactttatgcggtccaggtagggaaattttg
tcttggaagcttcatcccttggagcattttcttcaggtagacgagaagtacggaatggtt
gagcaggttatggttgacataacaaaccaggttggaatcgacattaatttggcagctagc
catgagtggtttttttctcctttacagttcatttctggacttgggcctaggaaagctgca
tccttgcagaggtcgcttgtgagagctggttcaatatttgttcgcaaggacctgataatg
catgggcttggtaaaaaggtttttgtaaatgcagccggtttcttgcgcattcgcaggagt
gggctagctgctagtagcagtcaatttattgacttattggatgacacccgaatacatccc
gagtcatatagccttgcccaagaattggctaaagatatttatgatcaggatgtcagaggt
gactcaaatgatgatgaggatgcgatagagatggcaatagagcatgtgagagatcggcca
ggctcattgagaaaagtggtccttgatgagtatcttgccagcaagaaaagggagaataag
aaggaaacctatagtaatatcatgagagaattgagctgtggtttccaggattggcggata
ccctttaaagacccaagtccagatgaagaattttatatgatttcaggtgaaactgaagac
accatcgctgagggaagaattgtgcaggctagtgttcggagattacagggtggaagagcc
atatgtgtattagattctgggttaactgggatgcttacgaaggaagatttctcagatgat
gggagagatattgttgagttatcggaacgactgaaagaaggcgatatcctgacatgcaag
atcaaatcaattcaaaagcagaggtatcaggtgttccttatttgcaaagaaagtgagatg
agaaacaacagacaccagcataaccagaatgtggatgcttattaccatgaggatagaaac
agtctccagcttgttaaagagaaagctcgaaaggaaaaagagctagtgaggaagcatttt
aagtcccggatgattgtccatcctcgctttcagaatatcactgctgaccaagctacagag
tatttgtctgacaaagactttggagaaagcattgttcgtccaagttctcgaggactcaat
tatttaactttgacgctcaagatttatgatgaagtttacgctcacaaggagatagttgaa
ggtgggaaagaaaacaaggacatcactagcctacagtgtattgggaaaaccctgaaaatt
ggagaggacaccttcgaggatctggatgaggtcatggatcgatatgttgatcctttggta
tctcatcttaagaccatgctcaactatcggaaattccgaaaggggaccaaatcagaagta
gatgatcttctgaagatcgagaagggcgaaaatccttcaagaatagtttactgctttggg
atttctcacgaacatccaggcacctttatactgtcttacataaggagcacaaatccacat
catgagtatataggcctatatcctaagggatttaagttcaggaaaaggatgtttgaggac
attgataggcttgtggcatacttccagaggcatattgatgacccattgcaggagtcagtg
ccatcaatccggtctgttgctgccatggtaccaatgagaagcccagcagaccgtggctca
tctggaggaagtggttggggtagttctcataatgaaggaggctggaaaggaaactcagat
cgctcaggctcagggaggggtggtgattacagaaatggtggtggacgtgatgggcatcca
agtggagcgccaaggccatatggtggtcgcggtcgtggtcgaggcagaggacgaagagat
catatgaacggtgatagacaagatgggaatggagactggggtaataacgatactggaact
ggagatggaggttggggaagtagtactggtaaaaagagcagtggtgcaggtggctggggt
aatgagtctggtggtggtggtgggagtactggtggttggggaagcgagtctgctgagaaa
aagagtgacggtgcgggcgcctggggtagtgggtctggcggtggcgatagcggtagtgga
ggttggggaaatgattctggcggtaaaaagagcagtgaagatggtggttggggaaacgag
gctggtggtaaaaagagcgatggagagggcggttgggggaatgaatccagcagtcaaaag
agcggtggcggcggtggtggtggatggtga
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