Camelina sativa (false flax): 104703962
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Entry
104703962 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 2-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03015
mRNA surveillance pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104703962
09122 Translation
03013 Nucleocytoplasmic transport
104703962
03015 mRNA surveillance pathway
104703962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104703962
03041 Spliceosome [BR:
csat03041
]
104703962
03009 Ribosome biogenesis [BR:
csat03009
]
104703962
03012 Translation factors [BR:
csat03012
]
104703962
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104703962
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104703962
mRNA cycle factors
Stress granule specific factors
104703962
Spliceosome [BR:
csat03041
]
Complex C
Other components
EJC/TREX
104703962
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
90S particles
Helicases
104703962
Translation factors [BR:
csat03012
]
Eukaryotic type
Initiation factors
eIF-4
104703962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
AAA_30
AAA_19
Flavi_DEAD
AAA
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-GeneID:
104703962
NCBI-ProteinID:
XP_019094301
LinkDB
All DBs
Position
1:complement(3577390..3578376)
Genome browser
AA seq
287 aa
AA seq
DB search
MATANVANPGRGDRRRGGGERDDDKSVFKTTTGVEAVANFEDMGINENVLRGLYEYGSEK
PSAIQQRAVMPILKGRDVIAQAHSGTGKTSMIALSVCQVVDTSSREVQALVLSPTRELAS
QTAKTIQAIGLHANIHAHACIGGKSVGEDIRRLEHGVQVVSGTPGRVCDMIKRRSLRSRA
ITILILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPREILEMTSKFMTDPVKVL
VKRDELTLDGIKQYFIAVEKEQWKFETLCDLFDTLTITQAVIFCNTK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcgaacgtggctaatcctggccgtggcgaccgtaggagaggcggtggagaa
agagatgacgacaagtcggtcttcaagacgaccacaggggttgaggccgtcgcgaatttc
gaagacatgggaattaacgagaacgttcttcgtggtctctacgagtacggttccgagaag
ccatcggccattcagcagagggctgtcatgccgattctcaaagggcgagatgttattgct
caagcccattccggtacgggaaagacctctatgattgccctctccgtctgccaagtcgtt
gacacttcgtctagagaggttcaggccttggtattatccccaacaagagagctagcttca
caaacagcgaagacgatacaagctataggattacacgccaatatccatgcacatgcatgc
atcggtgggaagagcgttggagaagacatcaggaggctggagcatggtgtccaggttgtg
tctgggacacctggtcgtgtctgtgacatgataaagaggagaagtctacgctccagagct
attactattctgattcttgacgaatcagatgagatgctgagtagaggattcaaggaccag
atctatgatgtttacagatatcttccaccggacctccaggtttgcttggtttctgcaact
cttcctcgggagattttggagatgacaagcaagttcatgacggatccagtgaaggtactt
gtgaagcgtgatgagttgactcttgatggaatcaaacaatattttattgctgtcgagaag
gagcagtggaaatttgaaacactctgtgatcttttcgacacacttaccattactcaagct
gttatcttctgcaatacaaaa
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