Camelina sativa (false flax): 104704606
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Entry
104704606 CDS
T05044
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104704606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104704606
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104704606
mRNA degradation factors
5'-3' decay
Decapping complex
104704606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_Prp19
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR75_2nd
Beta-prop_EML_2
Beta-prop_Vps41
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
104704606
NCBI-ProteinID:
XP_019100108
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All DBs
Position
1:5533818..5540136
Genome browser
AA seq
1291 aa
AA seq
DB search
MASSPGNTNPPPPPPPPFDLGTLFKPSSNPYPAPPASYPPPTGPFLHNQYDQQHYAPPPI
SAQPSPVTQDVSSSSSATNLHPQRTLSYPTPPLNLQSPRSNHNPGSHILALLNNNNNGGA
VPNQDPSHQLPVVNHNEIARSFPGGGSGPIRIPSCKLPKGRRLIGEHAVYDVDVRLQGEI
QPQLEVTPITKYGSDPQLVVGRQIAVNKDYICYGLKGGNIRVLNINTALRSLFRGHSQRV
TDMAFFAEDVHMLASVSLDGKVFVWKISEGSEGDDQPQITGKIVCALQILGEQDTKHPRV
CWHCHKQEILVVSIGKHVLRIDTTKVGRGEVFSAEAPLQCPLDKLIDGVQIVGKHDGEVT
DLSMCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDHIIL
ITGGPLNREMKIWVSAGEEGWLLPADAESWRCTQTLDLKSSTEPRAEEAFFNQVIALSEA
GLLLLANAKRNALYAVHLDYGSSPVDSRMDYLSEFTVTMPILSFIGTNDPPEEPIVKVYC
VQTLAIQQYTLDLSLCLPPPTENVGFEKSDSSVSREANLVESMFEPSGLKPTKLQSVNSV
PKPSIIVNRSESANKLSFPSSEATAQAIVPPNGEPKTSGLPSETSGAGSAYAMSPQLPVS
PRLSRKLSGYNTPVDAVEPVIPHHELGGRAPSADYSVDRQMDAVGERNMDVSSVEENSRS
KDSNVKPDDDVSGMRSPSAFFKHPTHLVTPSEILMGVSSAEASTTTEDKRDRDTNIQDVN
NDARGAEVEVKEVSEARSTQNGESNNHEETANRISENLEKVFCSQASNLSTQMERDCYPS
TEGTFIPGESKAYGQPLQAGDESGLDSRGGSPKLPESGSSSGLPQSSATNSKGKKQKAKT
SQGPGLSSTSSNLAESFNEQRESSSHPMTDSLPQFLAMQETMNQVTYCATTNFMSKELNT
MFEKTIKKELAAIGPALARSVTPVIEKTVSSAITESFQRGLGDKAVNQLDKSVNLKLEAT
IARQIQAQFQTSGRQALQEALRSGLESSVIPSFERSCKTMFEQVDSAFQKGIAEHTNAAQ
QRLDSGHSQLAHTLRETITSASSVAQALSRELAESQRNLLALAAAGANSGGSNPLITQLS
GGHLGGLLEKVEAPMDPTAELSRLISERKFEESFTSALQRSDVSIVSWLCSQVDLRGLLA
MNPLPLSQGVLLSLLQQLACDISKDTSRKLAWMTDVVAAINPSDQMIAVHARPIFEQVYQ
ILHHHRNAPGSDVSAIRLIMHVINSMLMGCK
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcttcacctggtaataccaatcctcctcctcctcctcctcctccttttgatctt
ggtactctcttcaaaccttcatccaatccttatccggccccgccggcttcttatcctccg
cccacaggtccttttcttcacaaccagtacgatcagcagcactacgctccgcctcctatc
tccgctcaaccatcgccggtcactcaagatgtgtcttcctcttcctccgcgactaatttg
catccacagagaacgctttcttatcccacgccacctctcaatctccagtctccccgttcc
aatcacaatcccggttcccacatcctcgctctcctcaacaataacaacaacggaggcgcc
gtgcctaaccaagacccttcgcatcagcttccggtagtgaatcacaacgagatcgctcgg
tcttttcccggtggtggttcgggtcctattcgtatcccgagctgtaagcttccaaaagga
aggcgattgattggtgaacacgcggtctacgatgtggatgtgagattacaaggggagatt
cagccgcagctcgaggtgactccgattaccaaatacggctcagatcctcagctcgtagtg
ggccggcaaatcgccgtgaataaggactatatatgctacggcttgaaaggaggaaacatt
agggttctcaatataaacactgcattaaggtctctgttccggggccattctcagagagtg
acggacatggctttctttgccgaggatgttcatatgttggccagtgttagtctagacgga
aaagttttcgtgtggaaaatctctgaaggatctgagggagatgatcaaccccagataact
gggaagatagtttgtgctcttcagatactaggagagcaagacaccaaacatccacgtgtt
tgttggcactgccacaaacaggaaattttggtagtttctattggtaaacatgtgcttcgt
attgatactaccaaagttggcagaggtgaagtattctctgctgaggcacctctccagtgt
ccccttgataagctgattgatggtgttcagattgttggcaagcatgatggggaagttaca
gatttgtcaatgtgccaatggatgaccacgcgcctggtttcttcttctgttgatggcacg
attaagatatggcaagatcgtaaagcacaaccgcttgtagttttgaggcctcatgatgga
catccagtcagttcagcgacgttcgttacatctcctgagagacctgatcacatcatactt
atcacagggggacctctaaatcgagaaatgaaaatatgggtctctgctggggaagaaggg
tggcttctaccagctgatgctgaatcatggaggtgtacccagacacttgacttgaaaagt
tcaactgagccacgagctgaagaggcattttttaaccaagtcatagcattatctgaagca
ggattgcttttacttgcaaacgcaaaaaggaacgccttatatgctgtgcatttggactat
ggttcttctccagttgattcgcggatggattacctgtcagaatttacagtcactatgccc
atattgagttttattggaacaaatgatcctccagaagagcctattgttaaggtttattgt
gttcagactctagcaatccagcagtatacattagacttaagcttgtgcttgccacctcct
acagagaatgtgggttttgagaagtcagattctagtgtgtcacgggaagcaaatcttgtt
gaaagtatgtttgaaccatctggactgaaacctaccaaattacaatcagttaattcagtg
ccaaaaccttctattatagtgaatagatcggaaagtgctaataagttgagttttccatca
tcagaagccacagcacaagcaattgttccacccaacggtgaacctaaaacttctggcctg
ccatctgagacaagtggtgcaggttctgcgtatgctatgtcaccccaacttcctgtaagt
cccagactatcaagaaaactttctggctacaacactcctgtagatgctgttgagccagtt
atacctcatcatgagcttggtggcagagcaccttctgctgactattctgttgataggcaa
atggatgctgttggagaaagaaatatggatgtgtcatccgtagaagaaaactcaagaagc
aaggactcaaatgttaagcctgatgatgatgtgtctgggatgcgaagcccatcagctttt
ttcaaacaccccactcatcttgtaactccttcagagatattgatgggcgtttcgtccgct
gaagcctccaccactactgaagacaagagagatagagatacaaatattcaggacgtgaat
aatgatgcaagaggcgcagaagttgaggtgaaagaagtaagtgaagcaaggtcgacacag
aatggtgaaagcaataatcatgaagaaactgcgaatcgcatttcagaaaatttagaaaaa
gtcttctgctcacaggcttcaaatctcagcacccagatggaaagagactgttatcctagt
acagaggggactttcattccaggggaatctaaggcttatggacaacctttacaagctgga
gatgaaagtggtcttgactcgagaggtgggtctccaaagcttcctgagtcgggttcatcc
agtgggcttccacagtcgtcagctacaaatagcaaagggaagaagcagaaggccaaaact
tcacaaggtcccggtctgtcatctacatcctcaaatcttgctgaatccttcaatgagcaa
cgtgagagctcaagtcatcccatgacagattcacttcctcagttcctagctatgcaagaa
acaatgaatcaggtgacatattgtgcaacgacgaacttcatgagcaaggagttaaatacc
atgtttgagaaaacgataaagaaggaattggctgcaattggtccagccctagcacgttca
gtgacaccagttattgaaaaaactgtatcttctgcaatcacagagtccttccagagagga
cttggtgacaaagcagttaatcagcttgacaaatctgttaatttaaagcttgaagcaacc
atagctaggcaaattcaagcccaatttcagacctctggcaggcaagccctccaggaagct
cttaggtcgggtctagagtcctcagtcataccttcttttgagaggtcatgcaagaccatg
tttgagcaagtagactcagctttccagaaagggattgctgagcatacaaatgcagcccag
caacggcttgactctggacactcccagcttgctcatactttaagggaaacaattacttct
gcatcatcagttgctcaagccttaagccgtgaattagctgagagccaaaggaatctctta
gctctcgcagctgctggagcaaattctggtgggtcaaatcccttgattactcaactaagt
ggcggacatttgggtggacttcttgaaaaggttgaagcacctatggacccaacagcagaa
ctttcaaggttgatatctgaacgtaagtttgaagaatctttcacttcggcactacagaga
agcgatgtctctatagtatcatggctttgctcacaggtggatcttcgtggactactggcg
atgaatccgcttccgctgagccaaggcgttcttctttcactgctgcagcagctggcctgc
gacatcagcaaggacacatctcgtaagcttgcttggatgactgatgtggtggcagccata
aacccatcagatcagatgattgcggtacacgctcgcccgatcttcgaacaggtatatcag
attctgcaccatcaccgaaacgcaccgggcagcgatgtctcagccatcagactgataatg
cacgtcatcaactccatgcttatgggctgcaaatga
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