Camelina sativa (false flax): 104706389
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Entry
104706389 CDS
T05044
Name
(RefSeq) SNF2 domain-containing protein CLASSY 2-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104706389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csat03400
]
104706389
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
104706389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
104706389
NCBI-ProteinID:
XP_010420880
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All DBs
Position
8:complement(5936652..5942012)
Genome browser
AA seq
1258 aa
AA seq
DB search
MKKRRFYGLKHPFDPCPFEFFCSGTWKAVEHIRIEDGKMAIRLLENGYVLEDIRPFQRLR
LRSRKATLTDCICFLRPDIDVCVLYPLHEDDLEPVWVDARIVSIERKPHDQSKCSCKINV
RIYIDQGCIASDKQRINKDSVVIGLNQISILQKFYKEQITDQYYRWKFSEDCTSLTRTRL
SLGKFLPDLSWLAVTSFTKSIVFHIRTVQTKMVYQIITDEGCSSSMSSMNITFEDGVSLS
KVVQFNPADIVDDSQDPEIKQETDCYPEEDEVVEMRRSKRRKVRPDRYTGCDYQPETVDG
WVRMMPYCRYDKWNVVNVESEVEEDGDTNDELYVPLSCLFKKKITNSQEDIPKVRRDETV
LVKKRKGNGLGRKERNSEISVIPFTPVFEPIPLERFGLDPKLLSGGGSFSRSQYFDEIDK
YRSKAVKYGNKMTEMEEMMEADLCWKGPNHVKSVKKRISRPSRSVVSKTEDSEERPRVFK
KVTLSAGAYNKLIDTYMNNIEVTIAAKDEPTSVVEQWEELKKTNFVSKLYGDMEQTSNED
DEGETSENKMLWREMELCLASSYILDDSEARVDNKAFEMARSGCEHEYRLDEEIGLCCRL
CGHVGTEIKHVSAPFAEHKKWTIETKQIEEHDLKTKLGHKEAEREDFTMSIDSSELLAAE
ESDNVWALIPQLKRKLHMHQQRAFEFLWRNIAGSVEPALMDPTSDKIGGCVISHTPGAGK
TFLIIAFLTSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLIHGRQTYSTFKHN
STVQFNGVPKPSKDVMHVLDCLEKIQKWHAHPSVLVMGYTSFLTLMREDSKFAHRKYMAK
VLRESPGLLVLDEGHNPRSTKSRLRKALMKVGTDLRILLSGTLFQNNFCEYFNTLCLARP
KFIHEVLMELDQKYKTRQYVNKAPHLLENRARKLFIDIIAKKIDASVGDERLQGLNMLKN
MTNSFIDNYEGSGSGSGDALPGLQIYTLLMNSTDVQHKILTKLQDVIKSHYGYPLEVELQ
TTLAAIHPWLIKTSNCCTKFFNQQELVEIEKFKHDAKKGSKVMFVLNLVYRVVKREKILI
FCHNIAPIRLFIELFENVFRWQRGREILTLTGDLELFERGRVIDKFEELGNPSRVLLASI
TACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYR
RTTWKEWVSSMIFSEEFVEDPSLWQAEKIEDDVLREIVGEDRVKSFHMIMKNEKASTG
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaagacgtttctatggtttgaagcatccctttgatccatgccctttcgagttc
ttctgctcgggtacatggaaggctgtggaacacataagaatcgaagatggaaagatggca
atacgtctattagagaatggttatgtgttggaagatatacgtccgttccaaaggcttcgt
ctcagatcaagaaaggcgacattgaccgactgtatctgtttccttaggcctgacatcgat
gtttgtgttctctatcctctccatgaggatgacttggaaccggtttgggttgatgcgagg
atagtttctatagagaggaagcctcatgatcagtctaaatgctcttgcaagatcaatgtt
agaatttacatagaccaaggctgcattgcttctgataaacaaagaatcaataaagattct
gtggtcatcggtctaaaccaaatctctattctccagaagttttacaaggaacaaattact
gatcagtactacaggtggaagttctctgaggactgcacttcgttgacaagaacaagactg
tcgttgggaaagttcttgccggatctttcgtggttggctgttacttcatttacaaaaagc
attgtgtttcacattaggacagtgcaaaccaaaatggtatatcagattataacagatgaa
ggctgtagcagttctatgagttcgatgaatattacttttgaagacggtgtctcgttgtca
aaagtggttcagtttaatccagctgatatagtcgatgattctcaagatcctgaaataaag
caagaaactgattgttatcctgaagaagacgaggtagtggaaatgcgtcggtccaagaga
aggaaagtgagacctgatagatatactggatgtgattatcagccagaaacagttgacggt
tgggtgcggatgatgccatactgccggtatgataaatggaatgttgttaatgtggagagt
gaggtcgaagaagatggtgatactaatgatgagttgtatgtaccattgtcatgtttgttc
aagaaaaaaataactaattctcaagaagatataccaaaagttcgtagagacgagactgtt
ttggtgaagaagaggaaaggaaatggacttggtcgaaaagagcggaactccgagatttct
gttattcctttcactcctgtatttgagcctataccgttggaacggtttggtcttgatcct
aaattgttgagtgggggtggcagcttctcaagaagccagtactttgatgagattgataag
taccgaagtaaagctgtgaagtacgggaacaaaatgacggaaatggaagagatgatggaa
gctgatctgtgttggaaaggtcctaaccatgtgaagtcggttaaaaaacgaatatctcga
ccatcgcggtcagttgtttcaaaaactgaggattctgaggaacgtccacgggtctttaag
aaagtaacattgagtgcaggtgcatataataagctgatagatacatacatgaacaacatt
gaggtaacaattgcagccaaggacgagcccaccagtgttgttgaacagtgggaggagtta
aagaagacaaatttcgtatctaaattgtacggggatatggaacagacctctaatgaggat
gatgaaggagagacttcagagaacaaaatgttatggagagaaatggaactctgcttagct
tcttcttacattcttgatgacagcgaggcaagagtggacaacaaggcttttgaaatggcg
agaagcggttgtgagcacgaatataggctggacgaagaaatcgggctgtgttgtaggtta
tgtggtcatgtaggaactgagataaaacatgtttctgcaccatttgcggaacataagaaa
tggaccatagagactaagcagatcgaagagcatgacctaaagactaaattaggccacaaa
gaagctgagagagaagatttcactatgtcaattgattcttcggaattgcttgcggctgaa
gaaagtgacaacgtttgggcattaatacctcagcttaagagaaaactacatatgcatcag
caacgggcttttgagtttctctggagaaatatagcaggatctgtggaacccgcacttatg
gatcccacttcagataagataggtggttgtgtgatctctcatacaccaggagctggtaaa
actttcctaattattgctttcctcacaagctacttgaagctattccccgggaaaagacct
ttggttcttgctcctaaaacaactctctacacttggtacaaggagttcatcaaatgggag
atcccagttccggttcatttgatccatggtcgacaaacctactctactttcaaacacaac
agcacagttcagttcaatggagttccaaaaccaagcaaagatgttatgcatgttcttgat
tgcttagagaaaatacagaaatggcacgcgcatccaagcgttcttgtaatgggttacacc
tcttttctgactctaatgagggaagactcaaagtttgctcatcggaaatacatggctaaa
gttctaagagagagcccagggcttcttgttcttgatgaaggacataacccaaggagtacc
aagtcaagactacgtaaggccttgatgaaagttggtactgacttaaggatacttctttca
ggtactttgtttcagaacaacttctgtgagtacttcaacacactgtgtttggctagacca
aagttcattcatgaggttctgatggagttagatcagaaatataagaccaggcaatatgtg
aataaggcgcctcacttactggagaacagagcacgtaaactcttcatcgatataatcgcc
aagaagattgatgcgagcgtgggagatgaacgccttcaaggtctcaatatgttgaagaat
atgactaatagtttcattgataattatgaagggagtggaagtggaagtggagatgctctt
cccggtctacagatctatacattgttgatgaactcgacggatgtacagcataagatactc
acaaaacttcaggatgtaataaagagtcattacgggtatccactcgaggtcgagcttcag
accacattggcagctatacacccttggttgatcaagacatcaaactgttgcacaaaattc
ttcaaccaacaagaacttgttgagatcgaaaaattcaagcacgacgcaaagaaaggatct
aaagtcatgtttgtgctaaaccttgtctaccgagtggtcaagagggagaagatcttgatc
ttttgccacaacatagcaccaatccgtctgtttatagaactgtttgagaacgttttcagg
tggcaaagaggcagagagatcttgaccttaaccggtgatctagagctgttcgagagaggt
agagtgatagacaaatttgaagaactgggaaacccatcccgagtcctactggcctcgatc
acagcttgcgcagaagggattagtctaaccgctgcttcacgggtaatcatgcttgactca
gaatggaacccttcaaagacaaagcaggccatagctcgtgcattcagaccgggacagcag
aaagttgtttatgtttatcagctcttgtccagaggaacattggaggaagacaagtacagg
agaacgacatggaaagagtgggtctcaagtatgatattcagtgaggagtttgttgaggat
ccgtctctatggcaagctgagaagattgaagatgatgttcttagagagatcgttggagaa
gatagagtcaaatctttccatatgatcatgaagaatgagaaggcttcaacagggtga
DBGET
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