Camelina sativa (false flax): 104707895
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Entry
104707895 CDS
T05044
Name
(RefSeq) DNA mismatch repair protein MSH6-like isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
csat
Camelina sativa (false flax)
Pathway
csat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
104707895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csat03400
]
104707895
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
104707895
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
104707895
NCBI-ProteinID:
XP_010422643
UniProt:
A0ABM0T8W0
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Position
8:complement(22083010..22096154)
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AA seq
1118 aa
AA seq
DB search
MGDVEEEKESKSDGDDSSDEDWGKNVGKEVCESEEDDDVELVDENEMDEEEKDEETPKVN
RVSKTDSRKRKASEVTKSGSEKKSRTDKDTILKGFKASVVEPPKKIVEADKVVKGLDDTI
LDGDALARFGARESEKFRFLGVDRRDAKRRRPTDENYDPRTLYLPPDFVKKLTGGQRQWW
EFKSKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQYMKGEQPHCGFPEKNFSVNIEKLV
RKGYRVLVVEQTETPDQLEQRRKEKGSKDKVVKREICAVVTKGTLTDGEMLSTNPDASYL
MALTEGGESLTDQKAEHIFGVCLVDVATKKIMLGQFKDDQDCSALSCLLSEIRPVEIIKP
AKVLSTATERTIVRQTRNPLVNNLVPLSEFWDAEKTMHEVGIFYKRISCQPSSAYSNEEK
ILGDGSSFLPKMLTELATEDKNGSLALSALGGAIYYLRQAFLDESLLRFAKFEYLPYCDF
SNVNEKQHMVLDAAALENLEIFENSRNGGYSGTLYAQLNQCVTASGKRLLKTWLARPLYN
PEMIKERQDAVAILRGENLPYSLEFRKALSRLPDMERLIARIFSSIEASGRNGDKVVLYE
DTAKKLVQEFISTLRGCETMAEACSSLRAILKHDKSRRLLTLLTPGQSLPNISSSSIKYF
KDAFDWVEAHNSGRVIPHEGADEEYDCACKAVEEFESSLKKHLKEQRKLLGDASINYVTV
GKDEYLLEVPESLSGSVPNDYELCSSKKGVFRYWTPTIKKLLKELSQANSEKESALKSIS
QRLIGRFCEHQEKWRQLVSATAELDVLISLAFASDSYEGVRCRPVVSGSTSADVPHLSAT
GLGHPVLRGDSLGRGSFVPNNVKIGGAEKASFILLTGPNMGGKSTLLRQVCLAVILAQIG
ADVPAETFEVSPVDRICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGR
GTATSDGQAIAESVLEHFIDKVQCRGLFSTHYHRLSVDYQTNPKVSLCHMACQVGEGIGG
VEEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVTKSQEFEALYGKKHGKTDGELA
AMVKQIISSVASDSDNSTSMDSLSKLHSMANTFFQLTS
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatgtggaagaagagaaagaaagtaaaagtgatggtgatgattcgagcgatgaa
gactggggaaagaacgtggggaaggaggtatgcgagagtgaagaagatgatgatgtggaa
ttggttgatgagaatgagatggatgaagaagagaaagatgaagaaactcccaaggttaat
agagtttccaaaactgactctagaaagcggaaggctagtgaagtaacgaagtcaggcagt
gagaagaaaagcaggactgataaagacactattttgaaaggttttaaggcttctgttgtg
gagcctccgaagaagattgtagaagctgataaggtagtcaagggtttggacgataccata
ctggatggagatgctctggctagatttggtgctcgtgaatctgagaaattccgcttcctg
ggagtagaccgaagggatgcgaaaaggagacgccctaccgatgagaattatgatccgagg
acactctaccttcctcctgattttgtgaaaaagttaacaggaggccagagacaatggtgg
gagtttaaatcaaagcatatggacaaagttgtattcttcaagatgggtaaattctatgag
ctttttgagatggatgcacatgtaggagccaaggaactggatatccagtacatgaaggga
gaacaacctcattgtggatttccggagaagaatttctctgtaaacatcgagaaactagtt
agaaagggctatcgggttttagtagtggagcaaacagaaacacctgatcagctggagcaa
cggcgaaaagagaaaggttccaaggataaagttgtgaagcgtgaaatatgtgcagttgtt
acaaaaggcacgctgacagatggggagatgctatcaactaatccggatgcatcttatcta
atggcattgactgaaggaggagaaagtttaactgatcagaaagcagagcacatttttggt
gtctgtttggttgatgttgcgacaaagaagataatgctgggtcagttcaaggatgatcaa
gattgcagtgcattatcttgcctgctatctgagataaggccggttgaaattattaaacca
gctaaggtgttgagtactgcaaccgagagaacaatagttagacaaaccagaaatcccttg
gtaaataatctggtcccactttctgaattctgggatgcagagaagaccatgcatgaagtt
ggaattttctacaagcgaattagttgtcaaccgtcttctgcttattctaatgaggaaaag
attctaggtgatggttcaagcttccttccaaaaatgctgactgaattagcaactgaagat
aagaatggcagcctggcactctctgctcttggtggtgccatttactacctgcgacaagca
tttttagatgagagtctgcttagatttgccaagtttgaatacctgccttactgtgatttc
agcaacgttaatgagaaacagcacatggttcttgatgctgctgctctcgaaaaccttgag
atatttgaaaacagtagaaatggaggctattcgggaacgctgtatgctcaactgaatcaa
tgcgtcactgcatctgggaaacggttactaaaaacatggctggcaagacctttatataat
ccggaaatgatcaaggaacgacaagatgctgtagcaattctgcggggtgaaaatcttccg
tactcactggaattccggaaggcgttgtccagacttccagacatggaacggttgattgca
cgtattttttctagcattgaagctagtgggagaaacggagataaagtggttttatatgaa
gatacggcaaagaagctggtacaagaattcatatcaactctacgtggttgtgaaacaatg
gcagaagcatgctcttctctccgtgctattttgaagcatgataaatccaggcgtctgctt
actttattaactcctggtcaaagtcttccgaatatatcatcatcctccattaagtatttc
aaggatgcctttgactgggtagaagctcacaattcggggcgtgtaataccccatgaagga
gctgatgaagagtatgattgtgcctgcaaagcagtagaagaatttgagtccagtttgaaa
aaacatctgaaagagcaacggaaattacttggagatgcatcaataaattatgttacagtt
ggaaaggacgaatacctcttggaagttcctgaaagtttaagtgggagtgttcctaatgat
tatgaattatgctcatcgaaaaagggtgttttccgatattggactcctaccatcaagaaa
ttattaaaagagctatcacaagcaaattctgaaaaagaatcggctctaaagagcatttca
cagagattaattggacgtttctgcgagcatcaagaaaaatggagacaattggtttctgca
acagctgagctcgacgtgttgatcagcctcgcttttgcaagtgattcttatgaaggagta
agatgccgcccagtagtatcaggttctacatctgctgatgttccacacttatctgccact
ggtctagggcatccagttctaaggggtgattcgttaggcagaggttcttttgtaccaaat
aatgtaaaaataggtggtgctgagaaagccagtttcatcctgctcacaggccctaatatg
ggtggaaaatctacccttcttcgccaagtttgcttggctgtaatcttggctcagattgga
gcagatgtcccagcagaaacctttgaggtttcgcctgttgacagaatatgtgtgcggatg
ggtgcaaaagatcatatcatggcaggacagagcacgtttttaacggaactttcagaaact
gcggtgatgttgacatcagctacccgaaactcgctggtggtgctagatgagcttggacga
ggaacagccacatcggatggacaagccattgcggaatccgtacttgagcacttcatagac
aaggtgcagtgtagaggattattctctactcattatcatcgtctctctgtagattatcaa
accaatccaaaggtctcactttgccatatggcatgtcaagtaggagaaggaattggtgga
gtagaagaagttacatttctctatagattgacacctggtgcatgtcctaaaagctatgga
gttaacgttgctcggttagctggtcttccagattacgtacttcagagagctgtgacaaaa
tcccaagaatttgaggccttgtacggtaaaaaacatggaaaaactgatggtgaattggca
gctatggtaaagcagatcatcagtagtgttgcatcagattctgataactcaacttcaatg
gactcattgtctaagctacactccatggccaacacatttttccagttaaccagctaa
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