Camelina sativa (false flax): 104707964
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Entry
104707964 CDS
T05044
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X3
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
csat
Camelina sativa (false flax)
Pathway
csat04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104707964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csat04131
]
104707964
Membrane trafficking [BR:
csat04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
104707964
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
TPR_Vps41
Clathrin
zf-RING_Vps41
TPR_VPS8_2
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
104707964
NCBI-ProteinID:
XP_010422731
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All DBs
Position
8:complement(22712927..22720989)
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AA seq
1281 aa
AA seq
DB search
MRIQLRWKKVKLIPNLEVYAQLPRPEGVREGSMPYTAWTCSTGNSSKEAEDRVSFLVIAW
DRRVQVAKLVKSDLKEYAKWSLDSPAIGVVWLDDQLLVIPTVSGHLYLFTRDGVVIHQTN
FSVAGSSGNDLISYHTYFTNVFGNPEKAYQNSVGVRGASVYILGTAHLIISRLLPWKERV
DVLRRGGDWMGAFNMAMSLFNGQAHGVVDLPKTVDAIREAIAPSLAELLFSYVDEVFSYI
SIAFSNQIEKNGVTHEQSSGTNNVNLEIEEQYNRVGGVAVEFCVHINRMDLLFDEIFSRF
VAVQQRDTFLELLEPYILRDMLGSLPPEIMQALVEHYSRKGWLQRIEQCVLHMDISSLDF
NQVVRICREHGLYGALLYLFNKGLDDFRSPLEELLIVLRNSEKQRATAIGYRMLVYLKYC
FLGLAFPPGHGTLNPTRLPSLRTELIQFLLEKSNTHDSSTCVTSRWIYLNLYHLLEMDTE
ATLDVLRYAFVEKEMVNHEGHLLESGEVSLESKTDDSLPEVNNNILIQNLIDALVHVLDG
DLSQADESGDPNDSESDKNWPAKEDSSLLYEFVAFYAARGKVSIPKSVLAQILDYLTSDH
IHPTYNVSSKLRETQLLNLLKAVPETDWDVAYVSHLCEKSHFYQVCGYIHILGRRYVAAL
DSYMKEADEPIHSFCYVNNMLSRLSGDEFTAFQSAIICRIPELLVLNRQGTFFLIIDNLK
DNITRIQEQLHSHPRSLFLYLKTVIEVHLSGSLDFSRLKKYEAADNSGENIRRDIPKEAE
IYLEELNGFPKFIQDNPVNVTDDMIELYLELLCKYEPKSVLRFLETFDSYRVEHCLRLCQ
EYGIVDAAAFLLERVGDAASALSLTLSGLNEKYVELENAVDYLITQMKLSASEGASLELF
SSALELKEVHGIQGVLQACVGLCQRNTPRLNPEESEILWFRFLDTFCEPLMDSYREPRNT
DEINKGPLDVKPLELNVNESDVAIKWRIPGSDTAGTHILRKLISQFIKEIVEGMIGYVRL
PTIMTKLLSDNGTQEFGDFKLTILGMLGTYGFERRILDTAKSLIEDDTFYSMNLLKKGAS
HGYAPRSLLCCICSCPLTKTFTALRVRVFNCGHATHLQCEPSENETSSSSSSVHVSSSGC
PVCMTKKTSKSSSKGKSFYLDYGLISTVSSNAGSAQRASPYLHENEMSNHSHNQQISRFE
ILTNLQKDQRLVQIESLPRLRLAPPAVYHEKVSRFSGFTPGESSSGKGTKPVKTEQGKKL
KAKGSIFGSRFALGKDKTSRM
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgaggattcaacttcggtggaagaaggtaaagctcattccaaatttggaggtgtatgca
caacttcctaggccagaaggggttcgggagggttccatgccatacactgcctggacatgc
tctacgggaaattcttccaaggaggcagaagatagggtttcttttcttgtcattgcgtgg
gatcgtagagttcaggttgccaagttggtaaaatcagaccttaaggaatatgccaaatgg
tcacttgacagtccagctattggtgttgtttggctagatgaccagttgctggtgatccca
actgtgtcgggccatttgtatctgttcacaagagatggtgtggtaattcaccagacaaac
ttttctgtggctggttcttctgggaatgacctaatttcctatcatacgtactttacaaat
gtctttggaaatcctgagaaagcttatcaaaactctgtgggtgtcagaggggcttcagta
tacattctcgggactgcgcatcttattatctccagacttttgccgtggaaggagcgggtt
gatgtgttaaggagaggaggtgactggatgggtgcatttaacatggcaatgtcacttttt
aatggtcaagctcatggggttgttgacctccccaaaactgtggatgccataagggaagcc
atagcacccagtttagcagagttgctattttcctacgtagatgaagtattttcttatatc
tcaatagcattttccaatcagattgaaaaaaatggagtaactcatgagcaaagcagtgga
accaataatgtcaatttagagatagaagaacaatacaatcgtgttggtggtgttgccgtt
gaattctgtgttcatattaacaggatggatttgctctttgatgagatattttccagattt
gtggctgtacaacaaagagatacatttttggagcttttggagccttatatattgagggat
atgcttggatctcttcctcctgagattatgcaagcgctggttgaacattatagtaggaaa
ggatggctacaaagaattgagcagtgtgtacttcacatggatatttcttccttagatttc
aatcaggtagtcagaatttgccgtgagcatgggctttatggggccttgctctatcttttc
aacaaggggttggatgatttcaggtcacctctggaggaactcctgattgtcttacggaac
agtgagaaacaaagggctacagccattgggtaccggatgcttgtttatctaaagtactgc
tttcttggtttggcttttcccccaggacatggaactctaaatcctacacgcttgccatca
ctcaggaccgagctgattcagtttctactggagaaatcaaacacccatgattctagtaca
tgtgtaacatctcgatggatttacttgaacctctaccatctactagagatggatactgaa
gccactttagatgtcctaagatatgcatttgtagaaaaagaaatggtgaatcatgagggt
catctgctggagtccggtgaagtaagtttagagtccaagactgatgacagtttacccgaa
gttaacaacaatatactaatccagaatcttatagatgctctagttcacgttcttgatggg
gacttaagccaggctgatgaatctggcgatccaaatgattcagaatcagataaaaattgg
ccggctaaggaggattcaagtcttctatatgagtttgttgcattttatgcagcacgtggt
aaagttagtattcccaagagcgtattggcacagattttagattacttaacatcagatcac
attcatccaacttataacgtatcttctaagttgagagagacccaattactaaaccttctg
aaagctgtaccggagactgattgggatgtagcttatgtatcacacctttgtgagaaatca
catttttatcaggtttgtggttatattcatattctcggtcgaaggtacgttgcagctttg
gatagctacatgaaagaggcagatgaacccatacattcgttttgctatgtgaacaatatg
ctgtcacggttgagtggggatgaattcactgccttccaatctgcaataatttgtaggatt
cccgagctccttgtattgaacagacagggaacattcttcctgattattgataatttgaaa
gacaacatcacacgcatccaagagcagctccattctcatccaagaagcttgttcctgtat
ctcaaaactgtcattgaggttcacttgtctgggagtcttgatttttctcgtctaaaaaaa
tatgaagctgcagataattcgggtgaaaacattagaagggatatacccaaagaggctgag
atttatttggaagaacttaatggctttcctaaattcatccaagataatccagttaatgtg
actgatgacatgattgagctttacttagagctattatgcaagtacgaaccgaagtcagtc
ttgagatttctggaaacctttgacagctacagggtggaacactgtctacgtctgtgccag
gaatatggaattgtagatgcagcagcattcctcttggagagggtgggtgatgcagcaagt
gctttgtcacttacactctctggactcaatgaaaaatatgttgaacttgaaaatgcagtg
gattaccttataacacaaatgaaattgagtgctagcgaaggagccagcttggaactattc
agtagtgctctagagttgaaggaggtacatggcatacaaggtgttctgcaagcttgtgta
ggattgtgtcagcgcaacactcctcgtcttaatccagaggagtctgagatactttggttt
cgctttcttgacactttctgtgaacctttgatggattcatatagggaaccgaggaacacc
gatgaaataaataaaggtccattagatgttaaaccgttggaacttaatgtcaatgaatca
gacgttgcaattaagtggaggattccaggatctgatacggcaggtacacacatcctgagg
aagctcatatctcaatttatcaaagagattgttgaaggaatgataggatatgttcgtctt
ccaacaatcatgacaaaactcctctctgacaacggtactcaagagtttggtgattttaaa
cttacaatattgggaatgcttggaacatatggattcgaacggagaatactggatactgca
aagtctttaatcgaagatgatacattctactccatgaacttacttaagaaaggtgcttct
cacgggtatgcacccagaagtttgctttgttgtatatgcagttgccctctcaccaagaca
tttactgctcttcgtgtacgtgttttcaactgtggccacgcaacacatcttcagtgtgaa
ccatcagagaatgagacctcatcatcatcgtcatcagttcatgtctcctcatcaggctgt
cctgtctgtatgaccaagaagaccagcaaaagttcttctaaaggtaaatcgttctacctg
gattatggactaataagcacagtttcgtcaaacgccgggtctgcacaacgtgcttcgcct
tacttacacgagaatgaaatgagcaatcattctcataaccagcaaatatcacggtttgaa
atcttaaccaaccttcagaaagatcagaggttggtacagatagagagcttgcctcgatta
aggcttgcacctccggctgtgtaccacgaaaaagtgagcagattctcgggttttacaccg
ggagagagtagtagcggtaaaggcacgaaacctgtcaaaaccgaacagggtaagaaactg
aaagcaaaaggatcgatttttgggtcaagatttgctttaggaaaggacaaaacgagcaga
atgtaa
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