Camelina sativa (false flax): 104708231
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Entry
104708231 CDS
T05044
Name
(RefSeq) U3 small nucleolar RNA-associated protein 20-like
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csat03009
]
104708231
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
104708231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Motif
Other DBs
NCBI-GeneID:
104708231
NCBI-ProteinID:
XP_010423069
LinkDB
All DBs
Position
8:complement(23852523..23864447)
Genome browser
AA seq
2640 aa
AA seq
DB search
MATAADSRAVKSHSNSEGRKRFMFKNFAERVNEIESKVLKVFRSLHKVKDEPSQGSTYLK
DCLVEFRELNTAADFISFYEEMLPCVQTLPLVVLHQDLIFSKLVSGLHIKARFSLEAFLW
LIYALSRDLLDGFLPFLPRLVNSIVTLLKNGGQKEPDILEQIFVSWSHIVRDLQKYLICD
IEGILRDTLELRYYPGEHIFKLMSPSISFLLRTARDEQLEIGIKRILSEIAYPLKKCGGD
SILYHVMRGTSEHLHSKAGKVLSFLLKDSTLSLGVQFPQGSCSIVEALSSTLQRICKDFK
AEELFVMWNCLYEETKESIKNKATAHLSRLLTLLTSVVRVEKGLKVYDYPYLVELVSQIV
PTFMDSSAVLDKVMGLMLCTIDSPSAANEMESIASQWAPIFSVNCSSLLNFLRELLGKDK
LVLKAFSSNILRSINNMILVSPEEVIPLLLSLCESEPTSHDKVNIIDESFESKFERIHEF
LEEKIKKIQTNIENIGLAQTEEAELAAAFGAIKCFPYFKVDPSLLICFKNTLIQHLSVSV
VNTFSAPELMWQSLLGAALRSCHKFSSSGRLIDSDLEEALSLAKSYKSCVQVLSPVTDYL
DFVYRPLLAKNDLSKACPELQANIAEDAFDIFSENLCHSKKDVRLVTLRILCHFETLYPN
PSFEEHPPMKKLKTEVIQKSSPESNNVLQLLKAIEESHLTVSTERELVKGINTIQNYLSA
GRIHDTYVPLVFKGMIGLFYNQFSEIWEPVSECLAVLMKKHTGAVWNDFVHYLGQCQLKL
EALDSHSENENDSISQMHTVLIERFNSSDTIRSTPTGKVVSLLLKTLQKIPSVAQSRVSD
LLPLLLKFLGYNSENPLRVGLYNGGACKGEEWKGLLIQWLTLLKLMKNPRSCCFSQFVND
VMENRFLDHNDAEIQMSVLECLVLWNDYLLPHRHRLENLIKPKELREELATWNFSMDIEE
AHRCHFVSLVIRILMPKVRNLKTSASRKHTSIRHREAVLGLISQLDVNELSLFFALLMKP
LNIISEDTMDLFWSSGKSSLDYFQKSNFLKSINADAISTLSWKKKFGFLHVIQHILEVFD
VLHVRPFLDFLMGCAVRLLITYDPNIDEEKSIDKESVSTYHDQAGSSLKQFKELRSLCLK
IIARVLEKYTDCDLGSEFWDLFFSAVNSLIKSFKQEGSSSEKPSSLFSCFLSMSKSRSLV
TLLCREESLVPDIFSIITVTTASEAIKSSALSFIENLLCLESDLDDHEDDDHMIKGFLDP
YIEALINSLHSLFRWDSLKRKTFKYHGEREIKILKLLSKHIGDESNVMEYLDILLSFLDK
RVKDSDIHREALVAIKDITSFIGSESTSKIIDTISPLLVDAAPDVRLCICDLFESLAKID
LSLDLMAKCVSDMNATSPMEVDDLDYETIIKAYAKIDADFFTKSSEQQMMIILSQSLYNI
SSSEVTLKDCAFNLLCTFIKFSASILCQEASAHSDNGKEVSKFDASWTGDRVLWIINKFI
LKHIGDALNRGISSGKEEILLIRKMVTKLPDSGNLAAFGPLCSENDDVDFFKNVLSIQIY
RRKKAINRFSKEIKDSSLPEGVVRKLLVSVFFNMLLDGEGKKGQDRKGQNRKGQDKNVQN
LQDACAEALASVSAHMSWCSYYALLNRCFREMKTHTEDKRKRLLNLVCSILDKFHFAKDG
HEQEVRTCLEKTLLPKIQKLMDSESDSVTLRSYVAAVKVLKLLPKEIMDSNLDSLVYKIS
KFLRHREDRTRDEARKVLAACLKELGLEGYFQLFLQKLVSLLKKGSEVHVLGYTVNSILS
ECLPNPTGWMLDHCLENLLDVVEADILGDIDEHKEDRKYSLKTKKETKTRKSLATLKLIA
ENVTFRSHALKLLSLVTRQLQRPMTSNLKSKLEDTLKHIAFGIEGNPSVDQGDLFCFIYH
RVEDGINNRSCLGDQASSLPSKKKRKSRHLQETCGGKSCPHLITVFALDLLDNRLKKIQP
SNTNEELVSKLDPFVKLLVGCLSSKYEDVVSSSVSCFTALINLPLPSLKSEAGKVITITA
ESAVSSSSHLVQSGKKLLKAVLGNEKFIFSSEELNMLIQLPMFVDLESDPSVDSLNASLS
LLKAIVKRKVPKIYDAADQVSKLMITHKDESVCKKCKELLIDFLVNHTLSKKRLEGHFNF
LLKNLSYEHSSGREVVLEVLEDLIKKFSQPKLGKQSVLDQQSQILFVELTRRLATDDAKD
SLSKICDLMELLIGRTSNYKFCLELCLGWYKQENTQATAAQVLGFFIEVRKEAFSEQIQS
ILLQEAKPILESAVQLQNNTVEEGSIPFWKEAYYSLVMIEKMLKQFPGLCFEKHLEDVWK
WVFKLLLHPHKWLQIITCRLLNYYFKKLAESRKTVADSLLGKPSSLFMVAASLCFQLKMN
AIAEEGNDQNNDPTEEDIVIQNIVFAVSGLHLRIGQSDHEYWSSLDKDEQAEFLEAFVLY
DSGKVRSTFLALISGSEKCQDDVRKVLIGSLLKRMGKLALDMGVIHTRIVRIVLSVYKEF
ASKLSQEDCRLYAYRILFPLYKVCQGFTGKVISGELKQLAEEVRYSIRDERLGSQVFVQV
YSEIKKSLEAKREKRKREEKLMAVINPERNAKRKLKLASKNKANKKRRIISSKMERWSRC
NT seq
7923 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgctgctgattctcgggctgtcaagtcacatagcaactctgaaggaaggaag
agatttatgtttaagaatttcgccgagagagtgaatgaaattgaaagcaaagtcctcaaa
gtctttaggagcttacataaggtgaaggatgagccttcacagggttccacatatctcaag
gattgcctcgttgaattcagggaactgaatacagcggcggattttatctcgttttatgaa
gaaatgctgccctgtgttcaaactctgccgttggttgtgttgcatcaagatttaatcttc
tctaaacttgtctctggtttacatatcaaagcaagattctctctcgaagcctttctctgg
ttgatatatgctttatcgagggatctcttggacggctttcttcccttccttccgcggctt
gttaactccatagtgactctcctgaaaaatggtggacagaaagaaccagatattcttgag
cagatattcgtatcatggtcgcacatagtgcgggatctgcagaagtatctcatatgcgac
atcgaaggtattctcagggatacattggagctgaggtattaccccggcgaacatatcttc
aaattgatgtcaccttccatatcatttttgttgaggactgcacgggatgagcaactcgaa
atagggatcaaaaggatcctctccgaaattgcatatccactgaaaaaatgtggaggagat
agtatactatatcatgtgatgaggggtacctctgagcatctccattccaaagctgggaag
gttttgagtttcttgctgaaagattcaacattgtccttgggtgttcaatttcctcagggt
tcttgtagtatagtagaagctttgagttcaactttgcaaagaatatgcaaggattttaaa
gcagaagaattatttgttatgtggaactgcctgtatgaagaaacaaaagaatcaatcaaa
aacaaagcaacagctcatttaagccgactcctgactctgcttacgtcagttgttagggtt
gagaaaggtctcaaggtttatgattacccatatttggttgaactcgtgagccagattgtg
ccaacttttatggattcctctgctgttcttgataaagttatgggactaatgctatgcacc
attgacagtcccagtgctgccaatgaaatggaatccattgcttcgcaatgggcccccatt
ttttccgtgaactgttcgagtttgctaaattttttgcgggagttgctagggaaggataaa
ttagttctgaaagcctttagtagtaatatattaagatcgatcaacaatatgattttggtg
tctcctgaggaggttattcctctgttactatcactgtgtgagagtgagccaacaagtcat
gacaaggtgaacatcatagatgaatcatttgagagcaaatttgagagaattcatgagttc
ttggaagagaagattaagaaaatccaaacgaatatagagaatataggattagctcaaact
gaagaggctgagttggctgctgcttttggagctatcaaatgttttccctattttaaagtg
gatccatcattgctgatttgctttaagaacactctcatacagcatttgtcagtctcagtt
gtaaatacttttagtgctccggaactgatgtggcagagcttacttggtgctgctttgagg
tcatgtcacaaattctcttctagtggaagactcatcgacagtgatctagaggaagctttg
tctcttgctaaatcttacaagtcatgtgtacaagtgctgtctcctgtgactgactatttg
gattttgtgtataggcctctattagctaagaatgatctctctaaggcatgcccagagctc
caagcaaatattgctgaagatgcgtttgacatattttctgaaaatttatgtcactcgaaa
aaagacgtccgtcttgtgactttaaggattttgtgccattttgaaactttgtatcccaac
ccttcttttgaagagcatcctccaatgaagaaactgaaaactgaagtcattcaaaagtct
tcccctgaaagcaacaatgttcttcagttattgaaagcaatcgaggagtctcatctcaca
gtatcgactgaaagggagttggtcaagggcattaatacaatacaaaattatctctctgct
ggcaggatacatgacacatatgtgccacttgtatttaagggaatgatagggttattttat
aatcaattttctgaaatatgggaacccgtatctgagtgccttgcggttcttatgaagaag
cacacaggagctgtgtggaatgattttgtccattatttggggcagtgccaactaaaactt
gaagcactcgacagtcatagtgagaatgaaaacgacagcatttcacagatgcatactgtt
ctgatagagcgttttaattcgtctgatactatacggtccacacctactggaaaagtagta
tctctgttgctcaagaccttacaaaaaattccctctgttgcacagtctcgagtctctgat
cttctccctttgttgttgaaatttttgggatacaacagcgaaaatcctttgagggtcgga
ttatataatggcggagcttgtaaaggggaggagtggaagggtttgcttatacaatggttg
actttactgaagttgatgaagaatccgaggtcttgttgttttagtcagtttgtaaacgat
gttatggagaacaggttcctggaccataatgatgctgaaatacaaatgagtgtcctagag
tgccttgtgttgtggaatgactatctactcccacaccgccatcgcttggagaatttgatc
aaaccaaaagaactgagagaagagctcgcgacctggaacttctccatggatatcgaagaa
gctcacagatgtcattttgtttctcttgtaatcaggatcctcatgcctaaagttaggaat
ttgaagacttcagcgtcgcgtaagcatacaagtattcgtcaccgggaggcggttcttggc
cttatatctcagctagatgttaatgaactttctctgttcttcgcattgttgatgaagcct
ttaaacatcatatcagaggatacaatggacttgttttggagctcaggcaaaagctctctg
gattatttccaaaagtcgaatttcctcaaatctatcaacgccgatgctatttcgacctta
tcctggaagaagaaatttggttttcttcatgtcatacaacacatacttgaagtctttgat
gtattacatgtccgaccatttctagactttctgatgggatgtgctgtccggctattaata
acctatgatccaaatatcgacgaagaaaagagcattgataaagagagtgtttcaacgtat
cacgaccaggctggcagttctttaaagcagtttaaagagttgagatccttatgtttgaag
atcattgctcgtgttcttgaaaagtacacggattgtgatcttggctctgagttctgggac
ctcttcttttctgcagtgaattcgttaatcaagagttttaagcaggagggttctagcagt
gagaaaccaagctcattgttctcatgcttcttgtcgatgagtaaaagccgcagtctcgtc
accttgttatgtcgggaagagtctcttgttccagacattttttcaattataacagtgacc
acagcttcagaagctataaagtcctctgccttgagtttcatagagaatctgctctgtctt
gagagtgacttggatgatcatgaagatgatgaccatatgatcaaaggattcttagatcca
tatatagaggcactgattaacagcttgcattctcttttccgttgggatagtttgaaaagg
aaaacattcaagtatcatggagaaagagagattaagatacttaaactattgtcgaagcac
atcggagatgaatctaatgtaatggagtatttggatatcttgctgtctttcttggataaa
cgtgtgaaagattctgatattcatcgtgaggctttggtagccattaaggacatcacatcg
tttattgggagtgagagtactagcaaaattattgatacaatctctcctctgcttgttgat
gctgcacctgatgttagattatgcatttgtgatctttttgaatctcttgcaaaaatcgac
ctctctctggatctaatggcgaaatgcgtcagcgatatgaatgcaacctcacctatggaa
gttgatgaccttgactatgaaacaataattaaagcttatgcaaagattgatgcagatttc
tttaccaaatcctcggagcagcagatgatgattatactctcacagagtttatacaacata
tcatcatcagaagttactttgaaggattgtgcattcaacctcttgtgcacttttattaaa
ttttcagcttccatactttgccaagaggcttcagctcactctgataatggcaaagaggtt
tcaaaatttgatgcaagctggacaggagatcgtgtgttgtggattataaataagtttatt
ttgaaacacattggagatgcactaaacagaggaatttctagtggaaaggaggagattctc
ttgatacgcaaaatggtgacaaaacttccagattccgggaatcttgctgcattcggaccc
ttatgctctgaaaacgatgacgttgatttctttaaaaacgtccttagcattcagatatac
cgtagaaaaaaggcgattaaccgtttttccaaggagatcaaagatagcagtctgcctgag
ggcgtagtgagaaaacttctagtctccgtgtttttcaacatgctgcttgatggagaaggt
aaaaaaggtcaagacagaaaaggtcagaatagaaaaggtcaagataaaaatgttcaaaat
ctccaagacgcatgcgcagaagcccttgcatccgtgtcagctcatatgagttggtgttcg
tactacgctctgctgaatcggtgtttccgtgagatgaagacgcatacggaggacaagaga
aagcgtctgctgaatctcgtctgctcgattttggacaaatttcattttgcaaaagatggt
cacgaacaggaggttaggacttgcctcgagaaaaccttgcttcccaagatacagaagctg
atggattctgagtctgatagtgttactctgagaagctatgtagctgcggtgaaggttcta
aagctgctccccaaagagataatggactcaaatcttgattctctagtttataaaatttcc
aaatttttgaggcatcgggaggaccgtacacgtgatgaggccagaaaggttctggctgct
tgtttgaaggaacttggactggagggttactttcaacttttccttcaaaaactagtttca
ttacttaaaaaaggatctgaggtgcatgtgctcgggtacactgtcaattccatcttatcg
gagtgcctgccaaaccctacgggttggatgttggatcattgtttggaaaatctccttgat
gtggtggaagctgatatccttggagatattgatgaacacaaagaggatagaaaatattca
ttgaagacgaagaaagaaacgaaaacacgcaagtcacttgctactctgaaattgattgct
gaaaatgtaacgtttagaagccatgcattgaagctcctttctctggtgactagacagctg
cagaggcctatgacttcaaatttaaaatccaaactggaggatacgttaaagcatattgca
tttggtattgaaggcaatccatctgtggatcaaggagatcttttctgttttatataccac
cgtgtggaagatggtattaacaacaggagttgccttggagaccaagcgtcttctctacca
tccaaaaagaaaaggaaatcgagacatctgcaagagacttgtggtggtaagtcatgtcca
catctcataaccgtgtttgctctggacttattggacaacagactgaagaaaatccaaccc
agcaatactaatgaagagctggtgtcgaagttggatccatttgtcaaactacttgttggg
tgcttgagctctaaatatgaagatgttgtatcttcatctgttagttgtttcactgcatta
ataaacttacctttgccctctctcaagtctgaagcaggtaaagtgataaccatcactgct
gagtctgcagtgagttccagtagtcatcttgtgcagtcaggcaaaaagcttttaaaagct
gttctcggcaatgaaaaattcattttctcatctgaggagttgaatatgctgattcagctc
cccatgtttgttgatctggaatcggatccatctgtggattcattgaatgcttctctttca
cttctcaaggccattgtgaaaagaaaagttccgaagatatatgatgctgcggatcaggtt
tccaagttgatgatcacacataaggatgaatcagtctgcaagaagtgcaaagagttactt
atagattttttggtgaatcatacactctctaagaaacgcctagaaggacattttaacttt
ctgctgaaaaatctgagctatgaacattcaagtggaagagaagtagttcttgaggttctt
gaagatcttatcaagaaattctcacaacctaaactcgggaagcagtcagttcttgaccag
cagtctcaaatcttgtttgttgagcttactcgtcgcttggcaactgatgatgctaaagat
tcgctgtccaagatctgtgatttgatggaacttctgataggtcgcactagtaattataaa
ttctgtcttgagctatgtctgggttggtataagcaggagaacacacaggctacagcagca
caggtactgggatttttcattgaagtcaggaaggaggcattttcggagcagatccagagt
atattgttgcaggaggctaaaccgattttggagtctgctgtacagttgcaaaataatact
gttgaggaaggcagcattcctttctggaaggaagcatactactctcttgtgatgatagag
aagatgctcaagcagtttcctggtttatgttttgaaaaacatttagaggatgtatggaaa
tgggtgtttaagttgttgttgcacccacacaaatggttgcaaattataacctgccggctc
ctgaattattatttcaagaaattagccgagtctcggaaaacagtagctgattctcttctt
ggcaagccaagtagccttttcatggtagctgcttctctttgcttccagttaaagatgaat
gccattgcagaagaaggcaacgaccaaaacaatgatcctactgaagaagatattgtcata
cagaatattgtttttgccgtctctggtcttcatttaaggattggacagtcagatcatgag
tactggtccagtcttgacaaggatgagcaagcggagttccttgaagcctttgtactatat
gattcagggaaagtaaggtctactttcttggctcttatttcaggcagcgagaaatgccaa
gatgatgtaagaaaggtattaattggaagtttgctcaaaagaatggggaagcttgccctt
gatatgggcgtgattcatacgagaatcgtgagaattgtgttgagcgtgtataaagaattt
gcgtcaaagttgagtcaagaagactgtcgcctatatgcctacagaattctgtttccgctg
tacaaagtttgccaagggtttacagggaaagtcatctcaggtgagttgaaacagctagcg
gaagaggtaagatacagtataagagacgagaggttaggtagccaagtgtttgtgcaagtg
tacagcgagatcaaaaagagtttggaagccaagagggagaagaggaagcgtgaggagaag
ctaatggcggtgataaaccctgagagaaacgcaaagaggaaactaaagctagcttcaaag
aacaaggctaacaagaaaaggaggattataagcagtaaaatggaaagatggtcacgctgt
tag
DBGET
integrated database retrieval system
