Camelina sativa (false flax): 104708990
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Entry
104708990 CDS
T05044
Name
(RefSeq) uncharacterized protein LOC104708990
KO
K06100
symplekin
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104708990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104708990
03019 Messenger RNA biogenesis [BR:
csat03019
]
104708990
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104708990
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
104708990
U7-dependent histone pre-mRNA processing factors
104708990
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT
HEAT_2
HEAT_EZ
Adaptin_N
PIK3R4-like_middle
TM_HPP
Cnd1
TPR_DNAAF5
Motif
Other DBs
NCBI-GeneID:
104708990
NCBI-ProteinID:
XP_010423951
UniProt:
A0ABM0TC13
LinkDB
All DBs
Position
8:complement(27427062..27437426)
Genome browser
AA seq
1442 aa
AA seq
DB search
MVGIMASYSRERLEGLASSAKSATELPPKLQRLRNLRRDLQKDESVFPIELLPHLFDLLS
DQFGAVRKFVAEILGEIGLKYVELLPEIVPLLIKSLEDETPAVARQVIACVADLFRSTLE
RVAVQGLHSSELNDLLESSWTWMIKVKDEICSVAFKQGNSGVKLCAMKFVEALILLYTPH
EGSEADFNITILRGGHPVLNIGDLSIEASQKLGLLLDQLRHPAAKSLNSSTIIVLINSLS
SVAKKRPAYCGRILPVLLSLDPLSFLKGVHAAAANLALKTVFLSYLKCTHPAAAPWKDRL
IGALKEIEGGGRAGKAKDLFNKNNGSIQDKDSAEDTKVSVDEKPLCASSDVAESNFGRKR
SGSEYNIDLNGDALNGKRARITPSVSEESTDGLNVNDGGSLPQVAGPSNSRAVRDIDPVQ
QLVDVFGTLVAQGEKAIGSLEILIKGIAADLLTDIVMANMHNIQPNGSSYADGTNELVMN
MCIVGSDAQIRYPPSFVADVLSLSTAFPPIAALINPCIPKTENEDEEVFAVHVDQQMFSA
EDAVLATGLLPSSDVSFPENEEDSTVFPPDVHYIGNIESGIPGLDSSAQLDLSGARVTSV
LNSMNVEAATKNQNASGKLLVDVIPSMSVDKSEEFSPKAAATGSTSLVLSTATSVASAPH
FVLPKISAPVVDLSDEEKDSLQKLVFLRIVEAYKQISMSGGSQLRFSLLAHLGVEFPSEL
DPWKILQEHVLSDYLNHEGHELTVRVLYRLYGEAEAEQDFFSSTTAASAYESFLLTVAEA
LRDSFPPSDKSLSKLLGDSPHLPKSVLKLLESFCCPGSGEEVEKDLQNGDRVTQGLSTVW
SLILMRPGIRSDCLKIALQSAVHHLEEIRMKAIRLVANKLYSLSFITQQIEEFAKERLFS
VASCISSERGDAETRMDDCNKKDIDLKSPPNKPQPVISGMETPSEATSATSITEAQRCLS
LYFALCTKKHSLFVHVFSIYKNALDPVKQAIHLQIPILVRTMGSSSELLKIIADPPSGSE
NLLMQVLQTLTEGPTPSSELILTIRKLFDTRIKDVEILFPILPFLPRDDVLRIFPHMVNL
PMEKFQVALSRVLQGSSQSGPVLSPSEVLIAIHSIDPARDGIPLKQVTDACNTCFAQRQT
FTQQVLAGVLNQLVQQIPLPMLFMRTVLQAIGAFPALSDFILEILSRLVSKQIWKYPKLW
VGFLKCAQTTQPQSYKVLLQLPPPQLGNALTKIPALRAPLTAHASQPEIQSSLPRSTLSA
LGLVPDSQGTQTSHVQANETQTSQEQQQQQASESQQTSQSEQVSVPLSPSKTDHQEPSQV
IGSQSQSSPGGTGLSEMSQSQNSPIGTRRSEMSQCQSSPVGAGLSEMSQSQSSPVGTGQS
EMGQSPQVSDSSAPAPTSHTRTSDSRASSLTQRDDDEKIDDTATSENEVTKSEKSKDSSE
EE
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atggttggaatcatggcttcgtattcaagagaaaggcttgaaggtctcgcgagttccgcc
aaatcagccacggaattgcctccgaagctgcaacgcttacgcaatttgcgccgggatttg
caaaaggacgagtccgtttttcccatcgagttgcttcctcaccttttcgatcttctctcc
gatcaattcggtgctgttcgcaagtttgtcgccgagatacttggtgagattggattgaaa
tatgttgaattattacccgaaatagtgccccttttaattaagtctcttgaagatgagaca
ccagctgtagcgaggcaggtcattgcttgcgtagctgatttattccgttccaccctcgaa
agagtggcagttcagggtttgcattctagtgagctgaatgatcttcttgaatcttcgtgg
acatggatgattaaggttaaggatgaaatatgctcagtggctttcaagcaaggaaacagc
ggtgttaaattatgcgctatgaaatttgtggaagcgcttattcttttgtatacacctcat
gaaggaagtgaagcagattttaatataactatccttcgtgggggacatcctgttttgaat
atcggagacttgtcaattgaggccagccagaaattgggtctactgcttgatcagcttcgg
caccctgcagccaaatctctaaatagctcgacgattattgttctcattaatagtctttca
tcagttgcaaagaaacgtcctgcatattgtggacgcattctacccgttctacttagcttg
gatcccctaagctttctcaaaggagtgcatgctgcagcagcaaatcttgcgttgaagact
gtatttctctcttacttgaaatgtacacatcccgctgctgcaccgtggaaggatcgcttg
atcggtgctcttaaggagatagaaggtggaggtcgggcagggaaagctaaagatcttttt
aacaagaataacggaagcattcaggacaaagacagtgcagaggataccaaggtatcagtg
gatgagaaacctctgtgtgctagttctgatgttgcggaaagtaattttggtaggaaaaga
tctggatcggaatacaatattgatctaaatggagatgctttgaatggaaaacgtgcaaga
ataaccccttctgtgtcagaagaatctaccgacggattaaatgttaatgatggtggctct
ctacctcaggttgccggaccaagtaatagcagagcagtgcgtgatattgatcctgttcag
caactagttgatgtgtttggaaccttggttgctcagggtgaaaaagcaattggatcgttg
gagattcttattaagggtattgctgcggatttacttactgatattgtgatggctaatatg
cataatattcaaccaaatggttcttcttatgctgatggcaccaatgagttggtgatgaat
atgtgtatagttggtagtgatgcacaaattagatatcccccatcatttgtagcggatgtc
ctttcactgtcaactgcattcccaccaattgctgccctgataaatccttgcataccgaaa
acggaaaatgaggatgaagaagtctttgccgttcatgtggaccagcagatgttttcagct
gaagatgcagttcttgccactggcttattaccttcttctgatgtctcttttccagaaaat
gaagaggacagtactgtgtttccaccagacgtgcattatatagggaatatagaaagtgga
atacctggattggactcttctgctcaacttgatttatcaggagcccgtgttacttctgta
ttgaattctatgaatgtggaggctgcaaccaagaatcaaaatgcgagtggaaaacttctt
gtcgatgtaattccttcaatgtctgtggataagtctgaggaatttagtccaaaggcggct
gccacaggttctactagcttggttttgtcaactgcaacttcagttgcttctgcgcctcac
tttgtcctgcctaagatatcagcacctgttgtcgacctttctgatgaggagaaagacagt
ttgcagaagctggtgtttttgcgcattgttgaagcatataagcaaatatcaatgtctggt
ggttcacaactccgtttttctcttcttgctcatttgggagttgagtttccttcagagtta
gacccttggaaaatattacaggagcatgtcctgtcggattatttgaatcatgagggacat
gagctgaccgtgcgggttctttacagactatacggggaggcagaagcagaacaagatttc
ttctcgtcaactactgctgcgtctgcatatgaaagtttcttgctgactgtggctgaagca
cttagagactcttttccaccgtctgacaaatctttaagtaaattgcttggagattctcca
catctgccaaaatcagttctgaagttgttggaatcgttttgctgtcctggaagtggtgaa
gaagttgaaaaggatttacagaatggagaccgtgtgactcaaggtctcagtactgtttgg
agccttattttaatgagacctggaatccgaagtgattgcctgaagattgcattgcagagt
gctgttcatcacttggaagaaattcgcatgaaagcaatccgcctggtcgcaaacaagctc
tattctttatcattcattacgcaacagattgaagaatttgcaaaggagaggctgttttcc
gtcgcaagttgcatttcttcagagagaggagatgctgaaacacggatggatgattgtaat
aagaaggatattgatctgaaaagtccaccaaataaaccacagcccgttattagtggcatg
gagacgccctccgaagcaacatcagctacttcaattactgaagctcaacgctgcctgtca
ctctattttgctctctgtacaaagaagcactccctttttgttcatgtgttcagcatttac
aagaatgcattagatcctgttaagcaggctattcatcttcaaatcccaatactagttcgt
actatgggctcatcctctgagcttcttaaaattatagcagacccacccagtgggagtgag
aaccttctaatgcaggttcttcaaaccctcactgaggggcccacgccttcttcagaattg
atacttactataagaaagttgtttgatacaagaataaaggatgtagaaattcttttccca
attttgccgttcctgccaagagacgatgttctacgcatttttccacatatggtgaatctt
cctatggagaaattccaagttgcactttctcgtgtgctgcagggatcatctcagtctggc
ccagtgctttctccatctgaagttttaattgctatccatagcattgacccagcaagagat
ggaatacctcttaaacaggtcacagatgcatgcaatacctgttttgcacagaggcagaca
ttcactcaacaggttttagccggcgttctgaatcaactggtccagcaaattccactgcca
atgttattcatgcgtacagttttacaagctatcggtgcttttccagctctgtcggacttc
atcttggagatcctttctcgtctcgttagcaaacagatatggaaatatccgaaactgtgg
gtggggtttttgaaatgtgcacagacaacacagcctcaatcatacaaggtcttactacag
cttcctccacctcaactgggaaatgcattgactaaaatcccagcattaagagctccacta
accgcacatgccagccagccagagattcagtcttcacttccaaggtctacattgtctgct
cttggacttgtccctgattctcaaggaacacaaaccagccatgtgcaagcgaatgagaca
caaacgagtcaggaacagcagcaacagcaagcaagcgagtcacagcaaacgagccagtcg
gagcaagtttctgtaccgttgagtccctccaaaacagatcaccaggaacccagtcaggta
attggcagtcagtctcaaagcagtcccggaggtacggggctgtctgaaatgagtcagtct
cagaacagtcccataggtacgcgccggtctgagatgagtcagtgtcagagcagtcctgta
ggtgcgggcctgtctgagatgagtcagtcacaaagcagtccagttgggactgggcagtct
gaaatgggtcagagtcctcaagtgtcggactcgagtgctccagcaccaacgagccatact
cgaacatcagactctcgagcgtcaagcctgacacagcgagatgatgatgaaaagatagac
gacacagcaacctcggagaacgaggtgacaaaaagtgagaaatcaaaggactcttcagaa
gaagagtaa
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