Camelina sativa (false flax): 104709210
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Entry
104709210 CDS
T05044
Name
(RefSeq) general negative regulator of transcription subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104709210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104709210
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104709210
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104709210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
104709210
NCBI-ProteinID:
XP_010424162
LinkDB
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Position
8:complement(4464436..4471175)
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AA seq
774 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRY
RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQ
PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRH
KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV
EGLEDLVTAGPLVKGTPLSMKSSLAATASQVRSISLPTHHQSTSQDKTEDTSLPDSNAET
VPRTPPPKNGAGLHSAPSTPAGGRPSLNVPASNVPNASVPLSTSIPAQISTESMGSLSPV
AAKEEDATTLLSRKPPSSVADATLRGIGRVSIPNQPQPSQPPSPIPANGSRISATSAAEV
AKRNIMGVESNIQPLTSPLSKMVLPPTVKVNEGTVSDSNPGDVAASIGRAFSPSIVSGSQ
WRPGSPFQNQNETVRGRTEIAPDQREKFLQRLQQVQQGHGNLLGMPSLSGGNEKQFSSQQ
QNPLLQQSSAISPHGSLGIGVQAPGFNVMNSASLQQQSNVMTQQLGPQSSVADVDHPRND
DQPQQNLPDDSTSITASKTIPNEDDSKVLFDTPSGMPSYMLYDFEQRNPAITPSTFPQTQ
APIINNPVLWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQR
HKEPKIATDEYEQGAYVYFDFQTPKDENQEGGWCQRIKNEFTFEYSYLEDELAV
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagccggaaattacaaggcgagatagatcgggttcttaagaaggttcaagaa
ggtgttgatgttttcgacagcatctggaacaagtggaatgtatatgatacagacaatgtc
aaccaaaaggaaaagtttgaggcggacttgaagaaggaaatcaagaagttgcagcgctac
agagaccagatcaagacttggattcagtctagtgagatcaaagataaaaaagtcagtgcg
tcatatgagcaatctctggttgacgctcggaagcttattgagaaagagatggagaggttt
aaaatttgtgagaaagagactaagacaaaagccttctccaaggaaggactgggtcagcaa
cctaaaactgatccaaaagaaaaagcaaagtcagagacaagggattggttgaacaatgtg
gtgagtgaacttgagtcgcagattgatagctttgaagctgagttggaaggactatctgtc
aaaaaaggaaagacaagaccacccagattgactcatcttgagacatctattacaaggcac
aaggatcacataataaagttggaactgatcttgaggcttctggacaatgatgaattaagt
ccagaacaagtaaatgacgtcaaagattttctggacgattatgtggaacgaaatcaggat
gattttgacgaattcagtgatgtcgatgagctctatagcacgttgccactagatgaggta
gagggtcttgaagatctagttactgctggcccccttgtaaagggtactcctttgagcatg
aagagttctttggcagcgacagcatctcaagttcggagcataagtttgccaactcatcat
cagagtacttctcaagataaaacagaggatacgtctttaccagatagcaacgctgagacg
gttccgagaacccctcccccaaagaatggcgcaggccttcactcagcaccatcaacacct
gctgggggacgtccaagtttgaacgtgcctgctagtaatgttccaaatgcatcagttccc
ttgtcaacttctattcctgctcaaatttccacagaaagcatgggaagtttgtctcctgtg
gctgccaaggaagaagacgcaacaaccttgctttctcgtaaaccaccctcatctgttgct
gatgctacattaaggggcattgggagagttagtatccccaaccagccccaaccaagccag
cctccgtctccaattccagctaacgggtctcgcattagtgcaacttcagctgctgaggtt
gcaaagagaaatataatgggagttgagagcaacatccaacctctaacttctccactgagc
aaaatggtattgccaccaactgtgaaggttaatgagggaactgtctctgatagtaaccct
ggtgatgttgcggctagtattggtagagctttttcaccatctattgtatctggttcgcag
tggaggcctggtagtccctttcagaatcagaatgaaacggtccgtgggagaactgaaata
gcacccgatcaaagagagaaatttttacagaggttacagcaagtacagcaaggccatggt
aacctcttaggcatgccttctctatctggaggaaacgagaagcagttttcttcacaacag
caaaatcctctcttacagcagagctctgccatctctcctcatggaagcttgggaatcgga
gttcaggcaccaggttttaatgtcatgaactctgcctccttacagcagcagtcaaatgta
atgactcaacaattgggtccccagtcttctgttgcagatgtagaccatcccagaaatgat
gatcaaccgcagcaaaacttacctgatgattcaacttccataacagcatcaaaaacaatt
ccaaatgaggatgattctaaagttctatttgataccccgtcgggaatgcccagctacatg
ttgtatgattttgaacagaggaacccagcaatcacaccttcaacatttccccaaacacaa
gcaccaatcataaacaaccctgtgctctgggaacgtttaggcagcgacgcttatgggacg
gatactttgttctttgcgttttactatcagcagaactcatatcagcaatatctagctgca
aaagagctgaagaaacagtcgtggagataccacagaaagttcaacacttggtttcagaga
cataaagagccaaagattgcaaccgatgagtatgaacaaggagcttatgtttatttcgat
ttccaaacccccaaagatgagaatcaagagggaggatggtgtcagaggatcaaaaacgag
ttcacgtttgaatacagttatcttgaagatgaactcgccgtatag
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