Camelina sativa (false flax): 104709527
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Entry
104709527 CDS
T05044
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
csat
Camelina sativa (false flax)
Pathway
csat03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
104709527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104709527
03019 Messenger RNA biogenesis [BR:
csat03019
]
104709527
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
104709527
RNA polymerase I system
104709527
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
104709527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
KOW7_SPT5
KOW4_SPT5
KOW6_SPT51-2
KOW
KOWx_SPT5
KOW5_SPT5
KOW1_SPT5
Spt5_N
GPKOW_C
KOW2_Spt5
DUF4438
KOW6_SPT5
Motif
Other DBs
NCBI-GeneID:
104709527
NCBI-ProteinID:
XP_010424426
LinkDB
All DBs
Position
8:14344157..14351259
Genome browser
AA seq
869 aa
AA seq
DB search
MPRSRDEDDDVDEDYEGLDLEEDEEEEEEEERGRGGGGGGSRRKRGRSSFIDDYAEEDSQ
EEDDDDDEDYGSRGGKGGAAASKRKKPSASIFLDREAHQVDDEDEEEEEDGEDDFIVDAG
TDLPDERGDRRYERRFLSRDENDEDVEDLERRIQERFSRHHEEYDEEATDVEQQALLPSV
RDPKLWMVKCAIGREREVAVCLMQKFIDRGADLQIRSVVALDHLKNYIYVEADKEAHVKE
AIKGMRNIYANQKILLVPIREMTDVLSVESKAIDISRDTWVRMKIGTYKGDLAKDPLAVN
EKELCKYFEPGNHVKVVSGTHEGATGMVVKVDQHVLIILSDTTKEHVRVFADHVVESSEV
TTGVTKIGDYELHDLVLLDNLSFGVIIRLENEAFQVLKGVPDRPEVALVKLREIKCKIEK
KFNVQDRYKNVIAVKDDVRVIEGPSKGKQGPVKHIYKGVLFIYDRHHLEHAGFICAKCTS
CIVVGGSRSGANRNGGDSFPRYGNFKAPAPVPSSPGRFQRGRGGYNSGGRHRGGRGGGDN
SLLGTTVKIRLGPFKGYRGPVVEVKGNLVRVELEMKIVTVDRNAISDNVATTPFRDTSRY
SMGSETPMHPSRTPLHPYMTPMRDSGATPIHDGMRTPMRDRAWNPYTPMSPSRDSWEDGN
PGSWGTSPQYQPGSPPSRAYEAPTPGSGWASTPGGSYSDAGTPRDHGSAYANAPSPYLPS
TPGQPMTPSSASYLPGTPGGQPMTPGTGLDVMSPVIGGDAEAWFMPDILVDIHKAGEDSD
VGVIRDVSDGTCKVSLGSSGEGDTIMALPSELEIVPPRKSDRVKIVGGQFRGSTGKLIGI
DGSDGIVKIDDNLDVKILDLAILAKFVQP
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgaagcagggacgaagacgatgatgttgacgaagattacgaaggattggattta
gaggaagacgaggaggaagaagaagaagaggagagaggaagaggcggcggcggcggcggt
tctagacggaagagaggaagatcaagttttattgatgattatgcggaggaggattctcag
gaagaagatgacgatgatgatgaagattatggtagccgtggaggtaaaggaggtgcagca
gctagtaagagaaagaagccttctgcttctattttcttagaccgagaagctcaccaggtt
gatgatgaggatgaagaggaagaagaagatggagaagacgactttatagtggatgctgga
acagaccttccggatgagcgtggtgatagacggtatgaacggaggttcctttctcgtgat
gaaaatgatgaggatgtggaagatctcgagagaagaattcaagagcggttctctaggcat
catgaagaatatgatgaagaagctacagatgtagaacaacaagcgcttttgccatcagtt
cgtgatccaaaattgtggatggtgaaatgtgcgattggccgcgaaagggaggttgctgtt
tgtcttatgcaaaagttcatagatcgaggagcagatttgcagatcagatctgttgttgcc
cttgaccatcttaaaaattatatatatgttgaagcagacaaggaagcacatgtgaaagag
gcaatcaagggcatgaggaatatatatgctaatcagaagatcttacttgtccccataaga
gaaatgacggatgttctttctgttgaaagcaaagcaattgatatatctcgggatacctgg
gttagaatgaaaattgggacgtataaaggtgatcttgcaaaggatcctcttgctgtaaat
gagaaagagctctgcaagtactttgaacctggaaatcatgtgaaggtggtttctgggacc
catgaaggagcaacgggcatggttgtcaaagttgatcaacatgtcctgatcattttatct
gacactaccaaagaacacgtccgtgtgtttgctgatcatgttgttgagagctcagaagtg
acaactggtgttaccaaaattggggactatgaacttcatgatcttgtgcttctggataac
ctgagttttggagtaattatacgactagagaatgaagcttttcaggttcttaaaggggtt
cctgacagacctgaggttgctcttgtcaaactcagagaaatcaaatgcaaaattgagaag
aaatttaatgttcaagatcgctacaaaaatgttattgctgtgaaagatgatgtcagagtc
attgagggtcctagcaaaggtaaacaaggtcctgtaaagcatatttacaaaggagtccta
tttatatatgatcgacatcatcttgagcatgccgggtttatctgcgctaaatgcacatca
tgcattgttgttggtggatcacgttctggtgctaatagaaatggtggtgattcttttcca
aggtatggcaatttcaaggcgcctgctccagtaccctcatctccaggaagattccagcgc
ggcagaggcggatataactctggagggaggcataggggtggaagaggagggggagacaat
tctttgttgggtactactgttaaaatccgtctaggacctttcaaggggtataggggacct
gtagtagaagtgaaaggaaatttagtgcgtgtagaacttgagatgaagattgtgacagtt
gatcggaatgcaatatcagataatgttgcgacaacaccgtttagagatacatctcggtat
agtatgggaagcgaaacacctatgcatccttctcggactccacttcatccttatatgact
ccaatgcgggactctggagctacacccatccatgatggaatgaggacacccatgcgtgat
agagcttggaatccttacacgcctatgagtccatctagggatagctgggaagacggaaat
ccgggatcttggggaacaagtcctcaatatcagccgggaagtcctccttcacgggcatat
gaagctccaactcctggctcaggatgggctagtactcctggtggtagttactcggatgca
gggacacctagggaccatggttcagcttatgctaatgccccaagcccttacctaccatcg
acacctggacaaccgatgacaccaagctcggcttcatacttacctggaactcctggagga
caaccaatgactccaggaaccggcctggatgtcatgtctcctgttataggtggggatgct
gaagcgtggttcatgcccgatattttggttgacatacacaaggctggagaggacagcgat
gtgggcgtcatccgagatgtttcggatggaacgtgtaaagtatctctcgggtccagtggt
gaaggtgacaccataatggccctcccaagcgaactggagatagttcctccgaggaagagt
gaccgtgtcaaaatagttggtgggcaatttcgtgggtctactggtaagcttatcggaatc
gacggttcagacggtatcgttaagatagatgataatcttgacgtcaagattctggacctg
gccatattagccaaatttgtgcaaccgtga
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