Camelina sativa (false flax): 104709938
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Entry
104709938 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104709938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104709938
03012 Translation factors [BR:
csat03012
]
104709938
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104709938
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104709938
Translation factors [BR:
csat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104709938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
T2SSE
nSTAND3
ATPase
AAA_19
AAA_16
PhoH
DUF7473
Myosin_head
Motif
Other DBs
NCBI-GeneID:
104709938
NCBI-ProteinID:
XP_010424776
LinkDB
All DBs
Position
8:complement(25654469..25662816)
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AA seq
1109 aa
AA seq
DB search
MRFTKRISLLLGQTTKIHSRSLLGNPSLHRAFTVGPVSNSPAFLISSRSGDGVTGLFYPR
HRRFIGHTAEQFSDDEYECEFEEHKASSSVANVDEWKWKLSILLANGSEQEIVSRDKRDR
RDYEQISNLAKRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGL
LQEHLDRQQLLSGKANEGVADSQPPKQTEELPDESSDSFLDGSVMEKVLQRRSMRMRNMQ
RAWQESPVGRTMLEFRKSLPSFKDKERLLQAIARNQVIVVSGETGCGKTTQLPQYILESE
IESGRGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGFKVRLEGMRGKNTHLLFCT
SGILLRRLLSDRNLNGVTHVFVDEIHERGMNEDFLIIVLKELLPRRPDLRLILMSATLNA
ELFSNYYGGAPTIHIPGFTHPVKAHFLEDVLEITGYKLTSFNQVDDYGQEKTWKTQKQLM
PRKRKNQITTLVEDALTKSNFESYNSRTRDSLSSWMPDCIGFNLIEAVLCHICRKERPGA
VLVFLTGWDDIRSLSDQIKAHPLLGDPNRVLLLMCHGSMATAEQRLIFERAPPNIRKIVL
ATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRLLPG
ECYHLYPRCVYDAFAEYQLPELLRTPLNSLCLQIKSLQVDSIAEFLSAALQAPESLAVQN
AIGFLKMIGALDEKENLTDLGKLLSILPVDPKLGKMLIMGAIFRCFDPILTIVSGLSVRD
PFLLPQDKKDLALSAKLRFSAKDYSDHMHDDSALNNKLSHNQSLVRAIICSGLFPGIASV
VHRETSMSFKTMDDGQVSLYANSVNSRFPTIPYPWLVFGEKVKVNAVLIRDSTGVPDSSL
ILFGGALSTGVQVGHLKMLDGYIDFFMDPNLADSYVKLKEELDKLLQRKLEDPSMDIHKE
GKYLMLAVQELVAGDQCEGRFVFGRDTKRPSQPQIGENKHSKDGTNPKSLLQTLLMRAGH
SPPKYKTKHLKTNEFRALVEFKGMQFVGKPQRNKTLAEKDAAVEALAWLTHTSDNSSTGQ
HNEDADSPPDVTDNMLKLLGGRRRRSKGK
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcacaaaacgaataagcctcctcttggggcagacgaccaagattcatagtcgt
tctctattgggaaatccatctttacacagggcttttaccgttggtccggtttctaactcg
ccggcgtttctgatttcgagtcgcagtggtgatggtgtcacgggattgttctacccaaga
catcgtcgtttcattggtcacactgcggaacagttctccgatgatgaatacgagtgtgaa
ttcgaggaacataaggcttcatcttctgtggccaatgttgatgagtggaagtggaagtta
agtattctgttggccaatggtagcgaacaagaaattgtttccagagacaaaagggatcga
agggattatgagcagatttcaaatcttgccaagagaatgggactgtacagtgaaatttac
gggaaagtggtggttgcaagcaaggttcctcttcccaactaccggccagatttggatgat
aagcgaccacaacgggaggtggtacttcctttgagtttgcaaagaagggtagagggactt
ctccaggaacaccttgatagacagcagctactctcaggaaaggctaatgaaggtgtagct
gattctcaacctcctaaacagactgaagaacttcctgatgagagttctgattcgtttctc
gatggttctgttatggaaaaggtacttcagaggaggagtatgcggatgcgcaatatgcag
agagcctggcaggaatcccctgtgggaaggacgatgctggaattccggaaatctttgcct
tcatttaaggacaaagaaagacttcttcaagctattgctcgaaaccaggtaatagttgta
tctggggagactggatgtggtaagacaactcaacttccacaatacattttggaatcagag
atagaatctggtcgaggagcattctgcaacatcatttgtacacaacctaggagaatatct
gccatggcagtttcagaaagagtgtcagctgagagaggagaacctcttggtgaaacggtt
gggtttaaagttcggctagaaggtatgagagggaaaaatacccatcttctattttgtaca
agtggtatcctacttagacgtctgcttagtgatcgcaatttgaatggtgtaacacatgta
tttgttgatgaaatccatgaaaggggcatgaatgaagatttcttaattatagtgttaaag
gagcttcttccacggcgtccagatctgagattgattctcatgagtgccactttaaatgct
gaactcttttctaattattatggaggggcaccaaccattcacattcctggcttcacacat
ccagtgaaggcacattttttggaggatgtactcgaaataacgggatataagttgacctct
ttcaaccaagttgatgactatggtcaagaaaagacgtggaaaacgcaaaaacagttaatg
cctcgcaaaagaaaaaaccagatcactactcttgttgaggatgctctcaccaagtcaaat
tttgaaagctataactctaggacacgtgattcactttcgtcttggatgcctgactgcata
ggatttaatctcattgaggctgttctctgtcacatctgccgaaaagaacgtccaggtgct
gtattagtatttttgacaggatgggatgatatcagatccctgagcgaccaaatcaaagcc
catcctctcttgggggatcccaatagggtcttactattgatgtgccacggctcaatggca
actgctgaacagagactcatttttgagagagcacctcctaatattcgaaaaattgttctt
gctacaaacatggcagaagctagtattacaataaacgatgtagtttttgtggttgactgt
ggcaaagcaaaagaaaccacctacgatgctttgaacaatacaccttgtttgctaccctcc
tggatttctcaagcttctgctcgacagagaagaggaagagctgggcgtctgcttcccgga
gaatgctatcacttgtaccccagatgcgtctatgatgcttttgcggagtatcaactacct
gaacttctgagaactcctttaaactctctttgcctgcaaattaaaagtcttcaggttgat
agcattgcagaattcttgtcagctgcacttcaggctccggagtctttggctgttcaaaat
gctattggattcctgaaaatgattggagcactggatgaaaaggaaaatctaacggatctt
ggaaaactcttatcgattctccccgttgatcccaagctggggaaaatgctgataatgggt
gccatcttccgctgctttgatccgatcctgacaattgtatcagggctcagtgtcagagac
cctttccttctacctcaagacaaaaaggacttagctttatcagccaagttgagattctcc
gccaaagactacagtgaccatatgcatgatgattcagctctcaacaacaagctaagtcac
aaccagtccctggttcgtgctatcatttgctctggcctattccccggaatagcatctgtt
gtgcacagagagacttccatgtcatttaaaacaatggatgatggccaagtatcactatac
gcgaattctgttaattcacggttcccaacaattccgtacccttggctagtctttggagag
aaagtaaaggtcaatgctgtgctcatacgggactccactggtgtccctgattccagtttg
atcctttttggtggtgcactgagcactggagtacaggtgggacatcttaaaatgcttgac
gggtacattgatttcttcatggatccgaatttggctgattcctacgtaaagctgaaggaa
gaactagataagcttcttcaaagaaagcttgaagatccaagcatggacatacacaaagaa
ggaaagtacctcatgcttgcagttcaagagctcgttgctggagaccaatgcgaaggtaga
tttgtctttggccgtgacacaaagaggccaagccaaccgcaaataggagagaacaaacac
tccaaagacgggacaaacccaaagagtctccttcagacacttttgatgagagcgggacac
tcgcctccgaagtacaagacaaaacatctaaagacaaacgaatttagagcacttgtggag
tttaaagggatgcagttcgttggtaaacctcagaggaacaaaacgctggctgagaaagat
gcagctgttgaggccttagcttggttgactcatacctctgataatagtagtacaggccag
cacaatgaggatgcagattcaccacctgatgtaactgataacatgctgaaactcctggga
ggacggcgtaggcggtccaagggaaaataa
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