Camelina sativa (false flax): 104710019
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Entry
104710019 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104710019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104710019
03012 Translation factors [BR:
csat03012
]
104710019
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104710019
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
104710019
Translation factors [BR:
csat03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
104710019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
NPHP3_N
ATPase
AAA_19
ABC_tran
Dicer_dimer
AAA_11
NACHT
PhoH
T2SSE
ATPase_2
Motif
Other DBs
NCBI-GeneID:
104710019
NCBI-ProteinID:
XP_010424846
LinkDB
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Position
9:complement(153846..160106)
Genome browser
AA seq
1116 aa
AA seq
DB search
MKDHHRLPPSLYVPPHQRRRSDYTFHPLPLSPVRYVSAYDDRVSEDREPQGTFHCANLDE
WNRNLSMLLQDSVKQEVVSREKKDRRDFDKLAALATTLGLYSHAYAKVVVFSKIPLPNYR
FDLDDKKPQREVNLHTDFLLRVEAYLREYLSKKSDRFPANSLARTSRISSPDEWLFEQPE
PMPASKNTLDKILWRRSLQLRDRQEYWEASVEGRRMVKSRRSLPASKQRDSVLTAISQNQ
VIVISGETGCGKTTQIPQFILESEIEANRGAFCSIICTQPRRISAMSVSERVAYERGEQL
GESVGYKVRLEGVRGRDTRLLFCTTGILLRRLLVDRNLRGVTHVIVDEIHERGMNEDFLL
IILKELLSRRPELKLVLMSATLDAELFSSYFGGAGVIHIPGFTYPVRSHFLEDILEMTRY
RLTPYNQIDDYGQERMWKMNKQIPKKRKSQIAFVVEDALGAADFKEFSPETQESLSCWNP
DCIGFNLIEFLLCDICENEGPGGILVFMTGWDDISSLKEKLQIHPIFGNPDRVMLLACHG
SMASFEQRLIFEEPASGVRKIILATNIAETSITINDVAFVIDCGKAKETSYDALNNTPCL
LPSWISKVSAQQRRGRAGRVRPGQCYHLYPKCVYEAFTEYQLPEILRTPLQSLCLQIKSL
NLGSISEFLSRALQSPELLAVQKAIEYLKIIGALDENEYLTTLGRYLSKLPMEPKLGKML
ILGAILGCLDPILTVVAGLSVRDPFLTPQDKKDLAEAAKFQFSRDHSDHLALVRAYEGWR
NAEEESAVYDYCWKNFLSIQSLRAIDSLRKEFFSLLKDTGLIDGNKSICNSEGNDANLTR
AVICYGMYPGICSVVHNERSFSLKTMEDGQVLLYSNSVNARETKIPYPWLVFNEKIKVNS
VFLRDSTAVSDSTLILFGGSISKGDIDGHLKMLGGYLEFFMKPAVAEICQTLKKELDELI
QNKLLNPKMDVQAHRELLSAIRLLVSGDGCDGRFVFGRQIRRPLETSALSTKPTLLSRTE
SGPGGDNSKSQLQTVLTRAGYAAPIYKTKQLMNNKFQTTVEFNETQIIGQPCSNKKSAEK
DAAAEAIQWLRGGAKESHEQVNHMSKLLKKSKTDHL
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatcatcatcgtcttcctccttccctctacgttccgcctcaccagcgccgtcgt
tccgattacaccttccatcctcttcctctctctcccgttcgctatgtctccgcttatgat
gaccgcgtctccgaggatcgcgaaccgcagggtacctttcattgtgccaacttggatgaa
tggaataggaacttgtctatgcttttgcaagattctgtaaagcaagaagttgtttccagg
gagaaaaaagatagaagggattttgataaacttgctgcactggctacaaccctgggattg
tatagtcatgcatatgctaaggttgttgtgttcagtaagatcccactccccaactatagg
tttgatcttgatgacaagaagccacagagggaggtgaatttgcatactgacttccttcta
agagtcgaagcttacctcagagaatacctcagtaaaaaatcagatagattccctgccaat
tccttagcaagaactagtagaattagcagtcccgatgaatggctttttgagcaaccagag
cccatgcctgccagcaaaaatacgctggacaaaattctttggcgaaggagtttacagctg
cgtgatcgacaggaatattgggaggcttcagtagaaggccgaagaatggtgaaatctcgg
agaagtctccctgcttccaagcaaagggattcagtattgacagcaatttcacaaaatcag
gttattgttatctctggagaaacaggttgtggcaagaccacacaaattccgcagtttata
ttagaatccgagattgaagcaaaccgtggagctttttgcagtatcatatgtactcagcca
aggagaatatctgctatgtctgtatcggagagggttgcttacgagagaggagagcagttg
ggtgaatccgttggatataaagttcgattggaaggtgttagaggaagagatacccgccta
ctcttctgcaccacaggcattttgttgagacggttgttggtagatagaaatttaagaggt
gttactcatgttatcgtggatgaaattcatgagcgtggaatgaatgaagatttccttctt
atcattcttaaggagctgctatctcgtcgcccagagcttaagctggttctgatgagtgca
actttagatgctgagcttttttcgtcatactttggtggggcaggtgtcattcacatccca
ggatttacatatccagtccgcagtcatttcctagaggatattctggagatgaccaggtat
agattgactccatacaatcaaattgatgattatggtcaagaaagaatgtggaagatgaac
aaacagatcccaaaaaaacgcaagagccaaattgcctttgttgttgaggacgcactggga
gctgctgacttcaaggagtttagccctgagactcaagagtctttatcttgttggaatcct
gattgcattggttttaatctcatagaatttctcctttgcgatatatgtgagaatgagggt
cctggtggtattttagtttttatgactgggtgggatgatatcagctctctgaaagaaaaa
ctgcagattcatccaatttttggcaacccagatcgggttatgttgcttgcctgccatggt
tctatggcaagttttgagcagaggttaatatttgaagaacctgcaagtggagtaagaaag
ataattctggccaccaatatcgcagaaacgagcatcacgattaatgatgttgcttttgtc
atcgactgtggaaaggcaaaagagacctcctatgatgcattaaacaatactccctgtttg
cttccttcttggatttccaaggtttcagctcagcagcgaagaggacgagccggtcgtgtt
cgacctgggcagtgttatcatctttacccaaagtgtgtatatgaagcttttacagaatat
cagttgcctgaaattttgaggacgcctttacagtcactgtgtctgcaaatcaaaagctta
aatctcgggagcatatccgagttcttgtcaagggcgctgcaatctcccgaactactagcg
gttcaaaaggccatagaatatctgaagataataggcgcattagatgagaatgaatacctc
acaactctaggtcgttatttgtccaagcttcccatggagccaaagcttggaaaaatgctc
atactaggagctattcttggttgccttgatcccatattgactgttgtcgctggcctgagt
gtaagagatcctttcttgacacctcaggacaagaaagatctcgcagaagctgcaaaattc
cagttttcacgggatcacagtgatcatcttgcacttgttcgggcatatgaggggtggaga
aacgctgaggaagagtctgctgtatatgattactgctggaaaaactttctgtcaatacag
tcgctgagagctattgattctctccgaaaagagttcttctcattacttaaggatactgga
ctcatagatggaaacaaatcgatctgcaattcagaggggaatgatgcgaatcttaccaga
gccgttatttgttatggcatgtatccaggaatctgctcagttgtgcataatgagagatca
ttttccctgaagacgatggaggatggccaagttcttctttattcaaattctgtaaatgca
cgggaaacaaaaataccatatccgtggttggtgttcaacgagaagataaaagtgaactct
gttttcttgagggattcgacagctgtctctgactctactcttatcctctttggcggtagc
atctccaaaggagacattgatggccacctgaaaatgttgggaggatacttggagtttttc
atgaaacctgctgttgcagagatatgccaaaccttgaagaaagagcttgacgagctgata
cagaacaaactacttaatcctaaaatggacgtgcaagcacaccgtgaactcttatcagct
atacggttgttagtctctggggatggatgtgatgggagatttgtgtttggtcgccaaata
cgtaggcctttagaaacatcggctttgtcaacaaaaccgacattgctttcaaggaccgaa
agtgggccggggggtgacaattccaagagtcagctccaaacagtactcactagggctggt
tatgcagcaccaatttataagactaagcaattgatgaacaacaagttccaaacaacagta
gaatttaatgagacacagatcataggacaaccttgcagcaacaagaagagtgctgagaaa
gatgcggcagctgaggctattcaatggctgagaggcggggctaaggaaagtcatgagcag
gtgaaccatatgtcaaagctgctgaagaaaagcaagacggatcacctctga
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