| Entry |
|
|---|
| Name |
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like isoform X1
|
|---|
| KO |
|
|---|
| Organism |
csat Camelina sativa (false flax)
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:csat00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104711160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:csat03019]
104711160
Enzymes [BR:csat01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104711160
Messenger RNA biogenesis [BR:csat03019]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104711160
mRNA degradation factors
3'-5' decay
Ski complex
104711160
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
9:complement(16749310..16756442)
|
|---|
| AA seq |
1202 aa
MYGDQDSGFFPRMVGPPKDFLRGSVNNRPFRPGGLEDSQSSERVLPEGVSSGQWVQELLN
GGPVQTVPPSFKQSLDLGDLMPYPQTWNVYEDQSSHGNASDVKSSTLSIQFDDLLKKAWE
EDAFSELERDDHTAESESLKAEAEPEANKGIETDATVLDEILSSAKTAILTEEAITGNSN
KQLRKEGWATKGDSQDIADRFYDLVPDMAIEFPFELDNFQKEAICCLEKGESVFVAAHTS
AGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSIRPEASCL
IMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINFVLLSAT
VPNTFEFADWIGRTKQKEIRVTGTAKRPVPLEHCLFYSGELYKVCENEVFIPKGIKDAKD
SQKKKNSNAVSVAPKQLTGSSAHQDGNKSQKHEAHSRGKQNKHSSAKDLGKSSYSGNSQN
NGAFRRSAASNWLLLINKLSKKSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRV
FCDKAFSRLKGSDRNLPQVLRVQSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFST
ETFAMGVNAPARTVVFDALRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDE
VPDESDLRRVIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEK
QQLLMLKRALPIKNIECIKCESAIEDYYDLYMEANECNSKMSEAVMQSPNAQNFLVQGRV
VVMKAETGIDNLLGVVLKGPSDTNRQYIVLVIKSEIPPPEKNMVSIGKKSSDPSQGYFIA
PKSKRGFEEEFYRKPSFRKGSVVIKIELPYHGVAAGVGYEVKGFDNKEFLCICDSKIKID
QFRLLEDGNKAAFSQTVQQLLDLKSNGNKYPPALDPIKDLKLKDAELVETYYKWTSLLQK
MSANKCHGCVKLEEHMKLAREIKKHKKDLKDLEFQMSDEALLQMPAFQGRIDVLKEIGCI
DEDLVVQIKGRVACEMNSGEELICTVCLFENQFEELEPEEAVAIMSAFVFQQKNTSAPSL
TPKLAKAKQRLYDTAIRLGELQAQYNLQIDPEEYAQENLKFGLVEVVYEWAKGTPFAEIC
ELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALHKKMDLASNAIKRDIVFAASLYVT
GV |
|---|
| NT seq |
3609 nt +upstreamnt +downstreamnt
atgtacggagatcaagattctggattttttccacgaatggttggacctccgaaggatttt
ctgagaggaagtgtcaataatcgccctttccgtccaggtggcttggaggattcacaatct
tcagagagagtccttccagagggtgtctctagtggccaatgggtacaggaattgctcaat
gggggtcctgttcaaaccgttcctcctagttttaagcagagtttagatcttggagatctg
atgccatatccccaaacatggaacgtttatgaggatcagagttcacatggcaatgcttca
gatgtaaagtcgagtacgttgtctattcagtttgatgatctgttgaagaaggcatgggaa
gaagatgctttctccgaacttgagagagatgatcatacagctgaatctgagtctctaaag
gcagaagctgaacctgaagccaacaagggaatagagactgacgccactgtgctggatgag
attttgtcatcagcaaaaacagcaatattgacggaagaggcaattactgggaacagtaat
aaacaactacggaaagagggatgggccactaaaggagatagccaagacattgccgaccgg
ttttatgaccttgttcctgacatggcgattgaattccctttcgaattagacaactttcag
aaggaggctatctgttgtttagagaagggggagtctgtttttgtagcagctcatacatca
gcggggaagacagttgttgcagaatatgcattcgctttagccaccaagcactgtacacga
gctgtttatactgctccaattaaaaccatcagcaaccaaaaatacagagatttttgtggg
aagtttgacgtaggacttctcacaggcgatgttagcataaggccagaggcatcttgtctg
atcatgactactgaaatattgaggtcaatgctttatcgtggtgctgatatcatacgtgat
atagaatgggttatatttgatgaagttcactatgtcaatgacgtagagagaggggttgtt
tgggaagaagttatcatcatgttgccaaggcatataaattttgtcctcctttctgcaacg
gtgccaaatacatttgaatttgctgattggattggccgaacaaaacaaaaagagatacgt
gttactggcacggcaaaaagaccagttcccctagagcactgcctattttattctggagaa
ctctacaaagtttgtgagaatgaagtttttattcctaaagggataaaggatgcgaaagat
tcacaaaagaagaagaattcaaatgcagttagtgtcgctcctaaacagcttacaggatct
tcagctcatcaagatgggaacaaatctcagaaacatgaagctcattctcgtggcaagcag
aataaacactcaagtgcaaaagatttgggaaaatcctcttatagtggtaacagtcagaac
aatggggcttttagaagatcagcagcttcaaattggttactgcttatcaacaagctctca
aaaaagtccctattacctgtggttgtcttctgtttctcgaagaattattgtgatagatgt
gctgacgctttgactgggactgacctcactagtagttctgagaaaagtgaaatccgtgtc
ttttgcgataaagctttttcaagattgaaagggtctgataggaatttacctcaggtcctc
agagtccaaagcttacttcatagaggaataggtgttcatcatgctgggctgcttccaata
gtaaaggaagttgttgaaatgcttttttgccgtggtgttattaaggtgctattttcaacg
gagacatttgccatgggggttaacgctccagccagaacggtcgtttttgatgctttgaga
aagtttgatggcaaggaatttagacaattgcttcctggagagtacactcaaatggcaggg
cgtgctggcagaagaggacttgacaaaactggcacagttgttgtcatgtgtcgcgatgaa
gttccagatgagagtgatctgaggcgtgtaattgttggaagcgcaacaagactagaatct
cagttccgactaacctacataatgatcctccatcttttacgtgttgaagaattgaaggtg
gaggacatgctgaaaagaagttttgctgaattccatgcccagaagaaattgcccgagaaa
cagcagcttctcatgctaaaacgtgctctaccaatcaaaaatatcgaatgtattaaatgt
gaatcggcaattgaagattactatgacttgtatatggaagcaaacgaatgtaacagcaag
atgtcagaagcagtaatgcagtctcctaatgcccagaactttcttgtacaaggaagagta
gtggtcatgaaagctgaaacgggcatagacaatttactcggagtcgttctgaagggacct
tccgacactaatagacaatatattgttttggtaataaaatctgaaataccgccaccagag
aaaaatatggtcagcattggcaagaagagctcagatccctctcaaggttattttattgcg
cccaagtcaaaacgtggttttgaagaagaattttataggaagccgagctttcgtaaaggt
tccgttgtgatcaagatagagctcccgtaccatggagtcgctgctggtgtaggttacgag
gttaaagggtttgataacaaagaattcttgtgcatatgcgatagcaagataaagattgat
cagtttcgtctactcgaggatgggaacaaggcagctttttctcagacggttcaacagctt
ttggatctgaaatcaaatggaaacaagtatcctcctgctctagacccaataaaagatttg
aagctgaaagatgctgagcttgtggagacgtactataaatggaccagcctgttgcaaaag
atgtccgcgaataagtgccacggttgtgtcaaactggaagagcacatgaagttagctagg
gagattaagaagcataagaaggatctcaaagatctagaatttcaaatgtctgatgaagcc
ctattacagatgcctgcgtttcagggccggatcgatgttctgaaggaaattgggtgtata
gatgaagacctcgtcgttcaaatcaaaggccgtgtcgcttgcgagatgaattctggggaa
gagttgatatgcacagtgtgtctgtttgagaatcaattcgaagaattagaaccagaagaa
gcagtggctataatgtctgcctttgtcttccaacagaaaaacacttcagcgccttcactt
actcctaagctagctaaagctaaacaaagactctatgatacagcaatcagacttggtgaa
cttcaagctcagtacaacttacaaatagaccctgaagaatatgcccaggagaatctcaaa
tttggtctggttgaagttgtctatgagtgggcaaaggggactccattcgcagagatatgt
gaactgactgatgtccctgaaggtctgatagttcggaccattgtgagattggatgagaca
tgccgtgagttcaagaacgctgccgccattatgggtaactcggcattacacaagaaaatg
gatttggcttcaaatgctataaaacgtgacattgtctttgcggctagtctgtatgtgact
ggagtgtaa |
|---|
