Camelina sativa (false flax): 104711160
Help
Entry
104711160 CDS
T05044
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104711160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104711160
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104711160
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104711160
mRNA degradation factors
3'-5' decay
Ski complex
104711160
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
104711160
NCBI-ProteinID:
XP_010426144
UniProt:
A0ABM1QDE6
LinkDB
All DBs
Position
9:complement(16749310..16756442)
Genome browser
AA seq
1202 aa
AA seq
DB search
MYGDQDSGFFPRMVGPPKDFLRGSVNNRPFRPGGLEDSQSSERVLPEGVSSGQWVQELLN
GGPVQTVPPSFKQSLDLGDLMPYPQTWNVYEDQSSHGNASDVKSSTLSIQFDDLLKKAWE
EDAFSELERDDHTAESESLKAEAEPEANKGIETDATVLDEILSSAKTAILTEEAITGNSN
KQLRKEGWATKGDSQDIADRFYDLVPDMAIEFPFELDNFQKEAICCLEKGESVFVAAHTS
AGKTVVAEYAFALATKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSIRPEASCL
IMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVWEEVIIMLPRHINFVLLSAT
VPNTFEFADWIGRTKQKEIRVTGTAKRPVPLEHCLFYSGELYKVCENEVFIPKGIKDAKD
SQKKKNSNAVSVAPKQLTGSSAHQDGNKSQKHEAHSRGKQNKHSSAKDLGKSSYSGNSQN
NGAFRRSAASNWLLLINKLSKKSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRV
FCDKAFSRLKGSDRNLPQVLRVQSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFST
ETFAMGVNAPARTVVFDALRKFDGKEFRQLLPGEYTQMAGRAGRRGLDKTGTVVVMCRDE
VPDESDLRRVIVGSATRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEK
QQLLMLKRALPIKNIECIKCESAIEDYYDLYMEANECNSKMSEAVMQSPNAQNFLVQGRV
VVMKAETGIDNLLGVVLKGPSDTNRQYIVLVIKSEIPPPEKNMVSIGKKSSDPSQGYFIA
PKSKRGFEEEFYRKPSFRKGSVVIKIELPYHGVAAGVGYEVKGFDNKEFLCICDSKIKID
QFRLLEDGNKAAFSQTVQQLLDLKSNGNKYPPALDPIKDLKLKDAELVETYYKWTSLLQK
MSANKCHGCVKLEEHMKLAREIKKHKKDLKDLEFQMSDEALLQMPAFQGRIDVLKEIGCI
DEDLVVQIKGRVACEMNSGEELICTVCLFENQFEELEPEEAVAIMSAFVFQQKNTSAPSL
TPKLAKAKQRLYDTAIRLGELQAQYNLQIDPEEYAQENLKFGLVEVVYEWAKGTPFAEIC
ELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALHKKMDLASNAIKRDIVFAASLYVT
GV
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgtacggagatcaagattctggattttttccacgaatggttggacctccgaaggatttt
ctgagaggaagtgtcaataatcgccctttccgtccaggtggcttggaggattcacaatct
tcagagagagtccttccagagggtgtctctagtggccaatgggtacaggaattgctcaat
gggggtcctgttcaaaccgttcctcctagttttaagcagagtttagatcttggagatctg
atgccatatccccaaacatggaacgtttatgaggatcagagttcacatggcaatgcttca
gatgtaaagtcgagtacgttgtctattcagtttgatgatctgttgaagaaggcatgggaa
gaagatgctttctccgaacttgagagagatgatcatacagctgaatctgagtctctaaag
gcagaagctgaacctgaagccaacaagggaatagagactgacgccactgtgctggatgag
attttgtcatcagcaaaaacagcaatattgacggaagaggcaattactgggaacagtaat
aaacaactacggaaagagggatgggccactaaaggagatagccaagacattgccgaccgg
ttttatgaccttgttcctgacatggcgattgaattccctttcgaattagacaactttcag
aaggaggctatctgttgtttagagaagggggagtctgtttttgtagcagctcatacatca
gcggggaagacagttgttgcagaatatgcattcgctttagccaccaagcactgtacacga
gctgtttatactgctccaattaaaaccatcagcaaccaaaaatacagagatttttgtggg
aagtttgacgtaggacttctcacaggcgatgttagcataaggccagaggcatcttgtctg
atcatgactactgaaatattgaggtcaatgctttatcgtggtgctgatatcatacgtgat
atagaatgggttatatttgatgaagttcactatgtcaatgacgtagagagaggggttgtt
tgggaagaagttatcatcatgttgccaaggcatataaattttgtcctcctttctgcaacg
gtgccaaatacatttgaatttgctgattggattggccgaacaaaacaaaaagagatacgt
gttactggcacggcaaaaagaccagttcccctagagcactgcctattttattctggagaa
ctctacaaagtttgtgagaatgaagtttttattcctaaagggataaaggatgcgaaagat
tcacaaaagaagaagaattcaaatgcagttagtgtcgctcctaaacagcttacaggatct
tcagctcatcaagatgggaacaaatctcagaaacatgaagctcattctcgtggcaagcag
aataaacactcaagtgcaaaagatttgggaaaatcctcttatagtggtaacagtcagaac
aatggggcttttagaagatcagcagcttcaaattggttactgcttatcaacaagctctca
aaaaagtccctattacctgtggttgtcttctgtttctcgaagaattattgtgatagatgt
gctgacgctttgactgggactgacctcactagtagttctgagaaaagtgaaatccgtgtc
ttttgcgataaagctttttcaagattgaaagggtctgataggaatttacctcaggtcctc
agagtccaaagcttacttcatagaggaataggtgttcatcatgctgggctgcttccaata
gtaaaggaagttgttgaaatgcttttttgccgtggtgttattaaggtgctattttcaacg
gagacatttgccatgggggttaacgctccagccagaacggtcgtttttgatgctttgaga
aagtttgatggcaaggaatttagacaattgcttcctggagagtacactcaaatggcaggg
cgtgctggcagaagaggacttgacaaaactggcacagttgttgtcatgtgtcgcgatgaa
gttccagatgagagtgatctgaggcgtgtaattgttggaagcgcaacaagactagaatct
cagttccgactaacctacataatgatcctccatcttttacgtgttgaagaattgaaggtg
gaggacatgctgaaaagaagttttgctgaattccatgcccagaagaaattgcccgagaaa
cagcagcttctcatgctaaaacgtgctctaccaatcaaaaatatcgaatgtattaaatgt
gaatcggcaattgaagattactatgacttgtatatggaagcaaacgaatgtaacagcaag
atgtcagaagcagtaatgcagtctcctaatgcccagaactttcttgtacaaggaagagta
gtggtcatgaaagctgaaacgggcatagacaatttactcggagtcgttctgaagggacct
tccgacactaatagacaatatattgttttggtaataaaatctgaaataccgccaccagag
aaaaatatggtcagcattggcaagaagagctcagatccctctcaaggttattttattgcg
cccaagtcaaaacgtggttttgaagaagaattttataggaagccgagctttcgtaaaggt
tccgttgtgatcaagatagagctcccgtaccatggagtcgctgctggtgtaggttacgag
gttaaagggtttgataacaaagaattcttgtgcatatgcgatagcaagataaagattgat
cagtttcgtctactcgaggatgggaacaaggcagctttttctcagacggttcaacagctt
ttggatctgaaatcaaatggaaacaagtatcctcctgctctagacccaataaaagatttg
aagctgaaagatgctgagcttgtggagacgtactataaatggaccagcctgttgcaaaag
atgtccgcgaataagtgccacggttgtgtcaaactggaagagcacatgaagttagctagg
gagattaagaagcataagaaggatctcaaagatctagaatttcaaatgtctgatgaagcc
ctattacagatgcctgcgtttcagggccggatcgatgttctgaaggaaattgggtgtata
gatgaagacctcgtcgttcaaatcaaaggccgtgtcgcttgcgagatgaattctggggaa
gagttgatatgcacagtgtgtctgtttgagaatcaattcgaagaattagaaccagaagaa
gcagtggctataatgtctgcctttgtcttccaacagaaaaacacttcagcgccttcactt
actcctaagctagctaaagctaaacaaagactctatgatacagcaatcagacttggtgaa
cttcaagctcagtacaacttacaaatagaccctgaagaatatgcccaggagaatctcaaa
tttggtctggttgaagttgtctatgagtgggcaaaggggactccattcgcagagatatgt
gaactgactgatgtccctgaaggtctgatagttcggaccattgtgagattggatgagaca
tgccgtgagttcaagaacgctgccgccattatgggtaactcggcattacacaagaaaatg
gatttggcttcaaatgctataaaacgtgacattgtctttgcggctagtctgtatgtgact
ggagtgtaa
DBGET
integrated database retrieval system
