Camelina sativa (false flax): 104711455
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Entry
104711455 CDS
T05044
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104711455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104711455
03009 Ribosome biogenesis [BR:
csat03009
]
104711455
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104711455
Spliceosome [BR:
csat03041
]
Complex A
U2 snRNP components
U2 related factors
104711455
Complex B
104711455
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
104711455
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
90S particles
Helicases
104711455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
ABC_tran
PhoH
TsaE
T2SSE
FtsK_SpoIIIE
AAA_7
AAA_29
ATPase
AAA_30
SRP54
AAA_24
TrwB_AAD_bind
NACHT
Decorin_bind
Motif
Other DBs
NCBI-GeneID:
104711455
NCBI-ProteinID:
XP_010426456
LinkDB
All DBs
Position
9:complement(19987733..19991632)
Genome browser
AA seq
438 aa
AA seq
DB search
MVNSARYFEIQEERRNLPVWVHKDEFLQALKENQMVILVGDTGSGKTTQIPQFVLEAVVY
ENPNPGGTARLVGCTQPRRVAAMSAARRVAEEMDAVIGEEVGYTVRFDDCSSSKTVLKYL
TDGMLLREALVDPLLSKYKAIILDEAHERSIATDLLFSILEKALTSRPALKLVVMSSTLY
AHELSHYFSGHNVPLIEVPGRLHPVEIVYTRDPVTDYLEAAVRKVIQIHMCEPPGDVLVF
LTGEEEIEDACSRIFHKLGDQVKVVPLYSFLPPAMQQRVFDPTPHPVRKIVVSTNIAETS
LAIDGIVYVVDPGFSMQKYYNPQTRLDSLVVSPISMASADQRARRACTTGPGKCFRLYTQ
EIYSGLIPLAVPEMLRANLVNTVLALKRLGVKDLLSLNFMDPPSQRTLVRALTDLFDLGA
MDDEGNLTEIGEMMSLEV
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggtgaactctgcgaggtatttcgaaatacaagaggaacgtaggaacctaccagtatgg
gtacacaaagacgagtttctccaagctctgaaggaaaatcagatggtgatactggtgggt
gatacgggcagtggtaagacaacgcaaatcccacagttcgttttagaagctgtggtctat
gaaaaccctaatcctggtgggactgcgaggttggttgggtgcacgcagcctcgtagagtt
gcagcgatgtctgcggcccgccgagttgctgaagagatggatgcagtgatcggtgaagaa
gtcggttacacagtccgtttcgacgattgcagcagctccaaaaccgtgctcaagtacctg
accgatggaatgcttctgagagaagcactggtggatccgctcttatcaaaatacaaagcc
atcattctggacgaggcccacgaaagaagtatagccacggatttgctttttagtattctt
gaaaaagccttgactagccggcctgctcttaagctggttgtgatgagttcaaccctatac
gcccacgagctcagccactattttagcggtcataatgtgcctctcatcgaagtcccaggt
aggctccatccagtggagatcgtttatactcgagatcctgtgacggactatctcgaggct
gctgtacgcaaagttatccagattcacatgtgtgagccacctggtgatgttcttgttttc
ctaaccggggaagaagagattgaagatgcttgcagcaggatcttccataagctcggagat
caagtcaaagtcgtgccactgtattccttcctcccgcctgccatgcaacagagggttttc
gatcccacaccacatccggtgagaaagattgtcgtctccaccaacattgcagagacttct
ctagccatcgacgggattgtttacgtcgttgatcctggtttctccatgcagaaatactac
aacccgcaaactcgtctagactccttggtggtgtccccaatatccatggcaagtgctgac
cagagagcacgtcgtgcctgtacaacagggcctggtaaatgtttcaggctatacacacag
gaaatttacagtggtttaataccgctggcggttcctgagatgcttagagcaaacctcgta
aacacagttctggccttgaaaaggctgggtgtgaaggacttgttatccttgaactttatg
gatcctccttcccagaggaccctcgttcgggccttgacggatttgtttgacctgggagca
atggacgatgaaggtaacttgacagagataggcgagatgatgagtctggaggtctaa
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