Camelina sativa (false flax): 104711673
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Entry
104711673 CDS
T05044
Name
(RefSeq) vacuolar protein sorting-associated protein 35C
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
csat
Camelina sativa (false flax)
Pathway
csat04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
104711673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csat04131
]
104711673
Membrane trafficking [BR:
csat04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
104711673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
RIF2_ASCE
SOP4
GET4
PH_PLEKHM2
Motif
Other DBs
NCBI-GeneID:
104711673
NCBI-ProteinID:
XP_010426686
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Position
9:complement(21778012..21782888)
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AA seq
789 aa
AA seq
DB search
MIADDDEKWLAAAMTAVKQNAFYMQRAIDSNNLKDALKFSAQMLSELRTSKLSPHKYYEL
YMRVFNELGTLEIFFKEETGRGCSIAELYELVQHAGNILPRLYLLCTIGSVYIKSKDVTT
TDILKDLVEMCRAVQHPLRGLFLRSYLAQVTRDKLPSIVSELEGDGDAQMNALEFVLQNF
TEMNKLWVRMQHQGSSREKEKREKERNELRDLVGKNLHVLSQLEGVDLGIYRDTVLPRIL
EQVVNCKDELAQCYLMDCIIQVFPDDFHLQTLDVLLGACPQLQPSVDIKTVLSGLMERLS
NYAASSVEALPNFLQVEAFSKFNYAIGKVVEAQVDLPAAGSVTLYLFLLKFTLHVYSDRL
DYVDQVLGSCVTQLSATGKLCDDKAAKQIVAFLSAPLEKYNNVVTILKLTNFPRVMEYLD
HETNKAMAIIIVQSVLKNNTHISTADEVDAFFELAKGLIKDFDGAIDNEIDEEDFQEEQN
FVARLVHNLYNDDPEEMSKIIFTVRKHILTGGPKRLPLTIPALVFSALKLIRRLRGGDEN
PFGDDSSATPKRILQLLSETVEALSDVSAPDLALRLYLQCAQAANDCELETVTYEFFTKA
YLLYEEEISDSKAQITALRLIIGTLQRMRVFNVENRDILTHKATGYSARLLRKPDQCRAV
YECAHLFWADECENLKDGERVVLCLKRAQRIADAVQKMTNASRGTSSTGSVALYVELLNK
YLYFLEKGNTKVTGDTIKSLAELIRSETKKVESGAESFINSTLRYIEFQRQQDGGMSEKY
EKIKMEWFE
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgatcgccgacgacgatgagaagtggctcgccgcagccatgaccgccgttaagcaaaat
gctttctatatgcagcgcgccatcgactccaacaatctcaaagacgctctcaagttttct
gctcagatgctcagcgagcttcgtacttccaagctttctcctcataaatactatgaactc
tatatgcgagtttttaatgaactggggacattggagatattctttaaggaagagacggga
cgtggttgctctattgcagagctgtacgagttagtccagcacgccggtaacattttgcca
agattgtatcttctctgtactataggatctgtatatatcaaatccaaggacgttactact
acggatatacttaaggatcttgttgaaatgtgtcgagctgttcaacatcctttacgtggt
cttttcttgagaagttaccttgctcaagttactagggataagttacccagcattgtttct
gagttggaaggagatggtgatgcacaaatgaatgctttagagtttgtgcttcagaatttt
accgagatgaacaaattatgggtccgaatgcaacatcagggatctagtcgggagaaggaa
aaacgggagaaagaaaggaatgaactacgtgatcttgttgggaagaaccttcatgtattg
agtcagttggaaggtgttgaccttggaatctacagagatactgttcttcctagaatactg
gagcaggttgtcaactgtaaggatgaacttgcacagtgctacctaatggattgcattatt
caagtctttcctgatgatttccaccttcaaactctcgatgtattattgggtgcttgtcca
caacttcagccgtctgttgatatcaagacggtcctttctggtctaatggaaaggctttca
aactatgctgcatctagtgtggaagcattgcctaatttcctgcaagtagaagccttttca
aagttcaattatgccattgggaaggttgtagaagcacaggtggacttgccagccgcagga
tctgtaacattgtatttgtttcttctgaaatttactctccatgtctattcggatcgtctg
gactatgtggatcaagttttgggatcttgtgttacccaactatctgcaacaggaaagctt
tgtgatgacaaggcagcaaaacagatcgtcgcgtttcttagcgctccgttggagaagtat
aataatgttgtaactattttgaagcttaccaactttcctcgagtaatggaataccttgac
catgagacaaacaaagcaatggcaattattatagttcagagcgttttgaaaaacaatact
cacatttctactgctgatgaggtcgatgcattctttgaactggcaaagggtctcatcaag
gattttgacggagcaattgataatgagattgatgaagaagacttccaggaagagcagaac
tttgttgcacggcttgttcacaacctctacaatgatgatccagaagaaatgtctaagatt
attttcacagtaaggaagcacatcctgactggaggacctaaacgtttgcctttaactata
ccagcccttgtcttttccgctctcaagttaattcggcgactgcgaggtggagatgaaaac
ccatttggagatgattcatcagcaacaccaaagagaattctacagcttttaagtgagacc
gtggaagctctatctgatgtttccgcacctgatttggcattgcgcctctacttgcaatgt
gctcaggcagcaaatgactgtgagttagaaacagtcacttatgagttcttcacaaaggca
tatcttctgtatgaagaagaaatttcagattcaaaggctcaaataacagcactacgctta
ataatagggacactccagcggatgcgtgtatttaatgttgagaacagagatattctgact
cacaaggcgacagggtactctgcaagactccttaggaagccagatcagtgtagagctgtt
tatgaatgtgcgcatctcttctgggctgacgagtgcgagaacctgaaagatggagagagg
gttgtgctttgcttgaaaagggcacaaagaattgcagatgctgttcaaaaaatgaccaac
gcatcccgtggtaccagtagcactgggtcggtggctctatatgttgaacttctgaacaag
tatctctacttcttggagaaaggaaacacaaaagtaacaggcgatacaatcaagagctta
gctgaattaatcagaagcgagacgaagaaggttgagtcaggcgcagagtcgttcataaat
agcactctacgttacatcgagtttcagagacagcaagatggtggcatgagtgagaaatac
gagaaaatcaaaatggaatggttcgaataa
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