Camelina sativa (false flax): 104712028
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Entry
104712028 CDS
T05044
Name
(RefSeq) endoribonuclease Dicer homolog 3 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
csat03036
]
104712028
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104712028
microRNA pathway
RISC loading complex
104712028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
PAZ
DEAD
ResIII
Helicase_C
DND1_DSRM
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
104712028
NCBI-ProteinID:
XP_010427121
LinkDB
All DBs
Position
9:complement(24315665..24324312)
Genome browser
AA seq
1568 aa
AA seq
DB search
MFVMHSSLEPEIMEEEDSQQGGGGGSNSLKRKFSEIDGDQNHAPMMIDSNDSYELKVYEV
AMNRNVIAVLGSGTNKSEITKMLIKAMGSSDTSKRLIIFLAPTVNLVKQQCCEIRTHVSL
KVEEYFGAKGVDKWTSQRWEEEVSKHDVLVMTPQILLDALRSAFLKLEMVCLIIIDECHR
TTGNHPYAKLMKEFYHESTNKPKMFGLTASDVVRKDQVSELERLMESKIFNPEERNGVEK
FATAVKEGPIFYDPPPFYSLELKEKLESSHHKFDASLRRLQELEEGSFLNMENKFETYQK
RLSIDYREILHCLDNLGLICAHLAAEVCLEKLSDTKEESETYKECSLVWKEFLEDILSSI
GVYLQQDLQQNHLSAVNSGHVSPKLKELFHLVDLFRGEKSLYVLIFVERIITAEVIERFV
KKEASLAYFNILYLIGNNSSTDASAQKSQIKIPDPFHVDKVNLIFITDVVEEGTQVPNCS
CMVCFDLPKSECSYSHFQKHAKQSNSKSIMFLERGNPKQRDHLDDLMRREVLIQDPEARN
LKSCPPPATSGHGMQETKAMVIPDSNITVSEEAAAVQTVIDPPSRNEQLACKQLRLDKNL
LQCSAKVKVASSKSKSSSSSAGSKKRKELHGTTCANELSGTWGENIDGAIFQAYKFGFSC
NISGESYSSFSLLLESTLAEDVGKVEMDLYLVRKLVKASVSPCGQIRLTQEEMVKAKCFQ
QFFFNGMFGNLFVGSKSSGTKREFLLQTDTSSLWHPSFMFLLLPVETKDLASTATIDWSA
INSCASIVEFLKKNSLRVSDGNQCSTLSSQEVLLGDKTEETNLIHFANASSDKDSLEELV
VIAIHTGRIYSIVEAVRDSSAMSPFEGDVSSEYATYAEYFNKKYGIVLTHPNQPLIKLKQ
SHHAHNLLVDFNEEMVVKTEPKAGNVRKKKPNIYAHLPPELLVRIDVPRAVLKSIYLLPS
VMHRLESLMLASQLREEIDCSIDNFSISSTSILEALTTLTCPEPFSMERLELLGDSVLKY
VVSCYLFLKYPDKDEGQLSRQRQSIISNSNLHRVATNRKLQGYIRNGAFEPRRWTAPGQS
SLFPVPCKCGVETREVPLDPKFFTENMTIKIGKSCDRGHRWTVSKSVSDCAEALIGAYYV
SGGLPAALHMMKWLGVDVNFDPNLVVEAINRVSLRCYIPKDNELTELETKIQHGFSAKFL
LKEAITHSSVHESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNNENF
AQVAVKNNLHTHLQRCATVLETQINEYLMSFTKPDETGRSIPSIQGPKALGDLVESIAGA
LLIDTRLDLDQVWKVFEPLLSPLVTPDKLQLPPYRELNELCDSLGYFFRVKCSNDGVKAQ
ATIQLQLDDVLLTGDGSEQTNKLALGKAASHLLTQLEKRNISRKISIGDNQSSMDVNLAC
NHSGRETPVPDSSEIQSIVIPVIGPINMKKGGPRGTLHEFCKKHLWPMPTFDTSEEKSRT
PFEFTDGDEKRTSFSSFISTITLRIPNREAVMYAGEARPDKKSSFDSAVVELLYELERRK
ILTIQKVN
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtcatgcattcctcgttggagccggagataatggaggaagaagattcacaacaa
ggaggcggtggaggaagcaattcgctcaagagaaaattctctgaaatcgatggagatcag
aatcatgctcctatgatgattgactctaatgatagttatgagttgaaggtgtatgaggtt
gcaatgaacaggaatgtaattgctgttctggggtctggaactaataagtcagagatcact
aagatgcttatcaaagccatgggttcttctgatacatccaaaagattgataattttcttg
gcccctactgtaaatcttgtcaaacagcaatgctgtgagattagaacacatgtgagtttg
aaggttgaagagtactttggagctaaaggagttgataaatggacttcccaacgctgggaa
gaggaagttagcaagcacgatgttctggttatgactcctcagatattattggatgccctt
agaagtgcattcctgaaactagagatggtatgtcttataataatagatgaatgccaccgc
accactggcaatcatccctatgccaagttaatgaaggaattctatcacgaatccactaac
aaaccgaagatgtttggattgactgcgtcagacgtcgttagaaaagatcaggtatcagaa
cttgagagactgatggaatcaaagatttttaatcctgaagagcggaatggggtggaaaag
tttgctacagcagtaaaagaaggtccaatattttatgacccaccaccattctatagtttg
gaattgaaagaaaagttggaaagttcacaccacaagtttgatgcttctcttagaaggctt
caagagttggaagagggcagttttctcaacatggagaacaagtttgagacatatcaaaag
cgattgtccatcgactacagagagatcttgcattgccttgacaatcttggcctgatttgc
gcgcacttggcggctgaagtctgcttggagaaactctcagatacgaaagaggaaagtgaa
acttataaagaatgctcattggtgtggaaggaatttcttgaggatattttatcctcgatt
ggggtgtatttgcagcaagatttgcagcaaaaccatctgtcagcagtaaattccggacat
gtatctccaaagttaaaagaactcttccatctagtggatttattcagaggggaaaaatct
ctatatgttcttatttttgttgagagaattataactgccgaagtgatcgaaagattcgtg
aagaaagaagcctctttagcttactttaatattttgtatttaatcggaaacaactcctcc
accgatgcatcggcacagaaatcacaaattaaaatccctgatccatttcatgttgacaag
gtgaatcttatatttatcactgatgtggttgaagagggaacacaggttccaaattgctca
tgcatggtttgttttgacctgcccaaatcagagtgtagttactcgcattttcaaaaacat
gccaaacagagtaattctaagtctatcatgtttcttgaaagggggaacccgaaacaaaga
gaccatctggatgaccttatgcgaagagaagtcctaattcaagatccagaagctcgaaac
ttaaaatcgtgtccacctccagcgacaagtggccatggcatgcaagagactaaagccatg
gttattccagattctaacataactgtatctgaggaagcagctgccgtacaaactgtgatt
gatcctcctagcagaaatgagcagttagcatgtaagcagttacgtttggataaaaatctt
ttgcaatgcagtgccaaagtgaaggttgcctcttctaaaagtaaatcatcttcatcatct
gcaggttcgaaaaaacgtaaggagttgcacgggacaacctgtgcaaacgaattgtcaggg
acctggggggaaaatattgatggcgccatctttcaggcttataagtttggcttctcttgt
aatatttctggcgaatcatactcgagtttctctcttttgcttgagtcaaccctcgctgaa
gatgttggtaaagttgagatggacctttacttggtcaggaagcttgtgaaggcttccgtc
tcaccttgtggccagatacgtttgactcaagaggagatggttaaagcaaagtgttttcag
cagtttttctttaatggcatgtttggaaatttatttgttggatctaagtcatcgggaaca
aagagagaatttttacttcaaactgacacaagttctctttggcacccttcctttatgttt
ctactgctaccagttgaaacaaaggatctagcttcgactgcaacaattgattggtcagct
atcaactcctgtgcctcgatagttgagttcttgaagaaaaattctcttcgcgttagtgat
gggaaccagtgcagcaccttatccagtcaggaagtcttactcggcgataaaacggaagaa
acgaatctgattcattttgccaacgcttcgtctgataaagatagtctcgaagaacttgtt
gtcattgcgattcatactggaaggatatactctatagttgaagcagtaagggattcttct
gctatgagcccgtttgagggcgacgtctcatcagaatatgctacttatgcagaatatttt
aataagaagtatgggattgttttgacgcacccaaaccagccgttgataaagttgaagcag
agtcaccatgcacacaaccttttagtcgacttcaatgaagagatggttgtgaagacagaa
ccaaaagctggcaatgttagaaaaaaaaaaccaaatatttatgcgcatttgcctccagag
ctattggtcagaattgatgtaccacgtgctgtgctaaaatcaatctacttgctgccctca
gtgatgcaccgcctagagtctctgatgttggccagtcagcttagggaagagattgattgt
agcatcgataacttcagtatatcaagtacttcgattcttgaagcactaacaacacttaca
tgccccgaaccgttttccatggaacggttggaactgcttggggattcagtcttgaagtat
gttgtgagctgttatctattccttaagtatcctgacaaagacgagggacaactatcacgg
cagaggcaatcgattatatctaactcgaatcttcatcgcgtagcaactaatcgcaaacta
cagggatacataagaaacggcgcttttgaaccgcgtcgctggactgcacctggtcagtca
tctctttttccagttccttgcaagtgtggggttgaaactagagaagtaccattggaccca
aaattcttcacagaaaacatgactatcaaaatagggaagtcttgcgacaggggtcataga
tggacagtttcgaaatctgtatcagattgcgctgaggccttgattggtgcctattatgta
agcggtggattgcctgctgctctccatatgatgaaatggcttggtgttgacgttaatttt
gacccgaacctagtcgttgaagcgatcaatagagtttctctacggtgttacatccctaaa
gacaatgagctcacagagttggagacaaagatccaacatgggttctctgcaaagttcctt
ttgaaagaggctatcactcactcctctgttcatgaatcctattcatacgagagattggag
tttcttggcgattctgtactggattttctaatcacccgtcacctttttaacacctacgaa
caaactgggcctggagagatgaccgatcttcgttcggcatgtgtgaataatgaaaatttt
gcgcaagttgcagtcaaaaataatctgcatacccaccttcaacgttgtgctacggttctt
gagactcaaataaacgagtatctgatgtcttttacaaagccagatgagactggtagatca
atcccttcaatacagggccctaaggctcttggagacttggtggagagtatcgctggagcg
ttgctgatcgatacaaggctagatcttgatcaagtgtggaaagtatttgagccgttgctt
tctccacttgtaactccagataaacttcagcttcctccataccgggagctcaatgagcta
tgcgactctcttgggtatttcttccgagtgaaatgttctaatgatggtgtcaaggcacaa
gctacgatccagttgcagctggacgatgttcttctaactggagatggatctgaacagaca
aataaactggctttgggtaaagcagcttcacatctgcttacgcaacttgagaagagaaac
atttcacgtaaaatttcgatcggggataatcaaagttccatggatgtcaatcttgcttgc
aatcatagtggccgagaaactcctgttccagattctagcgaaatccagagtatagtgatt
ccagttattggacctataaacatgaagaaaggggggcctcgtggaactctacatgagttc
tgcaagaagcatctctggccaatgcctacgttcgacacctccgaagagaaatcacgaact
ccgtttgaattcacagatggagatgagaagcgaactagtttcagcagtttcatatcgacc
ataacattaaggattcccaatcgtgaggctgtgatgtacgccggagaagctaggcccgac
aagaagagttccttcgactctgcagtcgtggaactgctctatgagctcgagcgccgcaag
atactcaccatacaaaaagtaaactga
DBGET
integrated database retrieval system
