Camelina sativa (false flax): 104716251
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Entry
104716251 CDS
T05044
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03015
mRNA surveillance pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104716251
09122 Translation
03013 Nucleocytoplasmic transport
104716251
03015 mRNA surveillance pathway
104716251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104716251
03041 Spliceosome [BR:
csat03041
]
104716251
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104716251
Spliceosome [BR:
csat03041
]
Complex C
Other components
EJC/TREX
104716251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
SAP_new25
Motif
Other DBs
NCBI-GeneID:
104716251
NCBI-ProteinID:
XP_010431944
UniProt:
A0ABM0TV56
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Position
10:complement(706031..709227)
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AA seq
646 aa
AA seq
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MSSSPFPILDNRPIDKWKVTELKEELKRRRLTTRGLKEELVRRLDEALRVEQEESERINS
AAVAAAEKANQEAQMFSFTGGDGDVTPDRNQSTPFAPVAAAFSAETTPVAAEKTPEPTET
MTTAEASAPVETTQPPLFSEPEVNAVPFASEEDEKVDDVRRDISGLDSSVVARHAPVVAE
TPSEQIVHKSENKEPSSGLDGGADNKAQPTEAVLEKSAMYNQVSEVIPVTGFEVKSDCIS
TDSVSNNEKIELKDNKIADNVKLEQNVSKSQEPSNVVGESHPMDVEAPLEQKISVGGGDD
SNAANTDMTKENNIIDAGDSEKLNLDRSSGDESMEDEPETKQTDSITSDDKSEKIEMLSK
GESRADIDAGKGKAPGNKRHPLVASDKRKLPANDQEAVGNNEPAKRRRWNSERIKVPEVQ
ATNSAVPTSTPRATGLKRDFSRSDSSASEDGPKERVVPPSPKEPTNSLRIDRFLRPFTLK
AVQELLGKTGNVTSFWMDNIKTHCYVSYSSVEEAAATRQAVYNLQWPPNGGRFLTAEFVG
PEEVKAKLEAPLPPPPPPPPQPRHQPLAQAPSRPPPTALPPPPPLAKPPQIVERLPPPPP
LVSEEQEPPIVTLDDLFKKTKAIPRIYYLPLSEEQVAAKLAANNNK
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcatcaccttttccaatcttggacaaccgaccaattgataagtggaaggttacg
gaattgaaagaggagcttaagcgacggagactaactacaagaggcttgaaggaggaatta
gttaggcgtctagatgaagctcttcgtgttgagcaagaagagtctgagagaatcaacagt
gctgctgttgctgctgctgaaaaagccaatcaagaggctcagatgttttcttttactgga
ggcgacggcgacgttacaccagatcgaaaccaatccactccttttgctccagttgccgcg
gcattcagcgctgagactactccagttgcagctgagaaaaccccagaaccaactgagact
atgacaacagctgaagcttcagctccggttgagactactcaaccccctttgttttcagaa
ccagaggttaatgcagtgccattcgctagtgaagaagatgaaaaagttgatgatgttaga
agagacatatctggtcttgatagttcagtggttgcacgtcatgcaccagttgtggcagag
acgcctagtgagcaaattgttcacaaatctgagaataaggaaccatctagtgggttggat
ggtggtgcggataataaggctcaaccaacagaggctgtgcttgaaaaatctgctatgtac
aaccaggtatctgaggtcatccccgttacagggtttgaggtaaaatctgattgtatttct
actgattctgtgtcaaataatgaaaaaatagaactaaaggataacaaaattgctgataat
gtcaaattagaacaaaatgttagtaagtctcaagaaccatcaaatgtcgttggcgaatcg
catccaatggatgttgaggcgccacttgagcagaagatatctgttggaggtggagatgac
agcaatgctgcaaacacagatatgaccaaagaaaataacattatcgatgcaggcgactca
gaaaagttgaatttagatagaagttctggtgatgagtctatggaggatgagccagagact
aagcaaaccgactcgattacatctgatgataagagtgagaaaattgaaatgctttctaag
ggggaaagccgtgctgatatagatgctgggaaagggaaagcccctggaaataaaagacat
ccactggtggcttctgataagagaaagcttcctgctaatgatcaagaagctgttggaaac
aatgagcctgcaaagaggcgccgatggaactctgagcgtattaaagttcctgaagtgcag
gccacaaatagcgctgtacccacttcaacaccaagggcgactggtctgaagcgtgacttc
tcaagatctgactcttcggctagtgaggatggacccaaggaacgtgtggttcctccatct
cccaaggagcctacaaattccctcaggattgatcgtttcctaaggccgttcacactgaaa
gctgttcaggagcttctgggtaaaaccggaaacgtcactagtttctggatggacaacatt
aagacccattgctatgtatcatattcctctgttgaagaagctgcagcaacaagacaagcc
gtgtataacctgcaatggccacctaatggaggccgctttctgacagctgaatttgttgga
ccagaagaagtgaaagcaaaactggaagctcctctgcctcctcctcctcctcctcctcct
cagcctcgacatcagccactggctcaggctccttcacggccacctccaactgctcttcca
ccgccaccccctctggccaaaccacctcagatcgtagaacgtcttcctccacctcctcct
ctagtctctgaggaacaagaacctcccattgtcactcttgatgatcttttcaagaagaca
aaagcaatccccaggatatattacttgcccttgtcagaggagcaagttgcagctaaactt
gcagctaataataacaagtga
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