Camelina sativa (false flax): 104716738
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Entry
104716738 CDS
T05044
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104716738
09123 Folding, sorting and degradation
03018 RNA degradation
104716738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104716738
03041 Spliceosome [BR:
csat03041
]
104716738
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104716738
mRNA cycle factors
Stress granule specific factors
104716738
Spliceosome [BR:
csat03041
]
Complex C
Other components
Complex C specific factors
104716738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_occluded
RRM_3
RRM_7
RRM_Nup35
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
104716738
NCBI-ProteinID:
XP_010432464
UniProt:
A0ABM0TWF4
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All DBs
Position
10:complement(2976810..2980635)
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AA seq
632 aa
AA seq
DB search
MAQVQLQGQAANGSTVAVTSAPVTSGGAAAATQFGTTSLYVGDLDLNVTDSQLFDAFSQM
GQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVR
RSGAGNIFIKNLDESIDHKALHDTFSTFGNIVSCKVAVDSSGQSKGYGFVQYASEESAQK
AIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLGENTTDDDLKTAFVEYG
KITSAVVMKDGDGKSKGFGFVNFENADDAAKAVEALNGHKFDDKEWYVGRAQKKSERETE
LRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKG
SGFVAFSIPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVTPVAMPPSV
GPRMPMYPPGGPGIGQQMFYGQAPPNMIPPQPGFGYQQQLVPGMRPGGGPVPNFFMPMVQ
PQQQRPGGGRRAGGIQQPQQQNSMMQQQMHPRGRMFRYPQGQGRGGSGDMPSYDMGNNMP
LPIGALASNLANASPEQQRTMLGENLYPLVEQLETESAAKVTGMLLEMDQTEVLHLLESP
EALKAKVAEAMDVLRSVAAGGAAEQLASLNLS
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggttcaacttcaaggtcaggctgcgaatggttcgactgtggctgtcacttct
gcaccggtgacttcaggcggagcagccgctgccacccagttcggcaccacgtcgctttat
gtgggagatcttgatctcaatgtgacggactcgcagcttttcgatgcgtttagccaaatg
ggtcaagtggtctctgttcgtgtctgtagggatttggccactcgcagatctcttggctat
ggatacgttaacttcaccaatccccaagatgctgcgagagccatccaagaattgaattac
atacctctttatggcaaacctattagggttatgtactcccatcgtgatcctagtgttcgc
cgaagtggcgctgggaacatttttatcaagaatttggacgagtccatcgaccacaaagca
ctgcatgataccttttcaacatttggaaatattgtgtcctgtaaggtagctgtggattct
tcaggccaatccaaaggctatgggtttgtgcaatatgccagtgaagaatctgcccagaaa
gctattgagaaactgaacggcatgttgctaaatgacaagcaagtgtatgtgggtcctttc
ctgaggagacaagaaagggactcaactgcgaacaaaaccaaattcaccaatgtgtacgtg
aagaatctcggagaaaatactactgatgatgacttgaagactgcttttgtcgagtatgga
aagataacaagtgctgtggtgatgaaagatggagatgggaagtctaagggctttgggttt
gttaactttgaaaacgctgatgatgctgctaaagctgtggaggctctcaatgggcacaaa
tttgatgataaggagtggtatgttggtagagcccagaagaagtccgagagggaaacagaa
ctaagggtccgttatgaacagaatttgaaggaagctgcagacaagtttcaaagttcaaac
ttgtatgtgaagaatttggatcctagcatttcagacgagaaacttaaagagatcttttct
ccttttggtaccgttacatcttgcaaggtgatgcgggatcctaatggaacaagcaaaggc
tcgggttttgttgctttctcgattcccgaagaagcaactgaagctatgtcacagttgagc
ggtaaaatgattgaaagcaagccactctatgttgctatcgcacagcggaaggaagacaga
agggtcagactacaggctcaattctcccaagtgacgccagttgcaatgccgccatctgtt
ggtccccgcatgccaatgtatcccccgggtggtcctggtattggacaacaaatgttctat
ggtcaggcccctcctaacatgattcctccccagcctgggtttgggtaccaacagcagctt
gttcctggaatgagacctggtgggggccctgtgcccaattttttcatgcctatggttcag
ccacaacagcagcgtcctggaggaggaagacgcgctgggggaatccaacagccccagcag
caaaattccatgatgcagcaacagatgcatccaaggggtcggatgttccggtatccacaa
ggacaaggacgtggtggtagtggtgatatgccttcatatgacatggggaacaacatgcca
ctgcctattggagctttggcttcaaatctggctaatgcaagtccagagcagcagaggacg
atgctgggtgagaatctgtacccgttggtggagcagcttgagacagagtctgcagccaaa
gtaactgggatgcttttagagatggaccagacggaagtgctccatctgttggagtcacca
gaagctctcaaggccaaagttgcagaggctatggatgttctcaggagtgttgctgctggt
ggtgcagccgagcagcttgcttccttgaacctctcttaa
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