KEGG   Camelina sativa (false flax): 104717216
Entry
104717216         CDS       T05044                                 
Name
(RefSeq) WD repeat-containing protein VIP3-like
  KO
K12602  WD repeat-containing protein 61
Organism
csat  Camelina sativa (false flax)
Pathway
csat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104717216
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104717216
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     104717216
SSDB
Motif
Pfam: Beta-prop_IFT122_1st Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WD40_Gbeta EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st DSE1_N Beta-prop_EIPR1 Beta-prop_NOL10_N Beta-prop_WDR19_1st WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_Aladin Beta-prop_VPS8 NBCH_WD40 Beta-prop_DCAF12 Beta-prop_TEP1_C Beta-prop_Vps41 WD40_RFWD3 Beta-prop_WDR35_TULP_N eIF2A Beta-prop_SPT8 Beta-prop_WDR41 Beta-prop_IFT140_1st ASA1 Beta-prop_WDR11_1st Ge1_WD40 Beta-prop_RIG_1st CFAP43_N Beta-prop_HPS5 Beta-prop_NUP159_NUP214 TRM82_WD CFAP251_N PD40 Tricorn_2nd Beta-prop_ACSF4 Beta-prop_pof12 Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 104717216
NCBI-ProteinID: XP_010433060
UniProt: A0ABM0TXZ2
LinkDB
Position
10:complement(5276221..5277947)
AA seq 321 aa
MKLAGLKSIENAHEDSVWAATWVPATEDRLALLLTGSLDETVKLWRPDELDLVRTNTGHS
LGVAAVAAHPSGIIAASSSLDSFVRVFDVDTNATIAVLEAPPSEVWGMQFEPKGTILAVA
GGSSASVKLWDTASWRLISTLSIPRPEAPKPSDKSSSKKFVLSVAWSPNGKRLACGSMDG
TICVFDVDRSKLLHELEGHNMPVRSLVFSPVDPRVLFSGSDDGHVNMHDAEGKTLLGSMS
GHTSWVLSVDASPDGGAIATGSSDRTVRLWDLKMRAAIQTMSNHNDQVWSVAFRPPGGTG
VRAGRLASVSDDKSVSLYDYS
NT seq 966 nt   +upstreamnt  +downstreamnt
atgaagctcgcaggtctcaaatcgatcgagaacgctcacgaagattccgtctgggcggcg
acttgggttccggcgacggaagatcgactggcgttgcttctgactggatctctagacgag
acggtgaagttatggagaccggacgagctggatcttgtgcggactaatactggacactcg
ttgggagtagcagctgtggcggcgcatccttctgggattattgcagcgtcttcttcgctc
gatagctttgtccgcgtcttcgatgttgatactaatgctactattgctgttttggaagct
cctccttctgaggtttggggaatgcagtttgagcctaagggtacaatccttgctgttgct
ggtggaagtagtgcctcggtcaagctttgggacactgcaagctggagattaatctcaact
ctatcaatcccacgcccagaagcaccaaaaccttctgataaatccagcagcaagaaattc
gttctctcggtggcttggtctcctaacgggaaacggcttgcttgtggttcaatggatggc
acgatatgtgtatttgatgttgaccgttcaaagcttcttcacgagctagaaggtcataat
atgcctgtaaggtcccttgtgttctcccctgtagacccaagagttctcttctccggatca
gatgatgggcatgtgaacatgcacgatgcagaagggaaaacgctgttaggatccatgtca
gggcacacaagctgggtgctcagtgttgatgctagcccagacggtggagccatagcaact
ggctcgagcgatagaactgtgaggctatgggatcttaagatgagagctgcaatccagaca
atgagcaatcacaatgaccaggtttggtctgtggcgtttagacctccgggtggaactggt
gtccgggctggtagactcgctagtgtctctgacgacaagagtgtatcactctatgattac
tcatga

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