Camelina sativa (false flax): 104718402
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Entry
104718402 CDS
T05044
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E-like
KO
K07466
replication factor A1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03030
DNA replication
csat03420
Nucleotide excision repair
csat03430
Mismatch repair
csat03440
Homologous recombination
csat03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104718402
03420 Nucleotide excision repair
104718402
03430 Mismatch repair
104718402
03440 Homologous recombination
104718402
03460 Fanconi anemia pathway
104718402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csat03000
]
104718402
03032 DNA replication proteins [BR:
csat03032
]
104718402
03400 DNA repair and recombination proteins [BR:
csat03400
]
104718402
Transcription factors [BR:
csat03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104718402
DNA replication proteins [BR:
csat03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104718402
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104718402
MMR (mismatch excision repair)
104718402
DSBR (double strand breaks repair)
HR (homologous recombination)
104718402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
RADX
CDC24_OB3
zf-CCHC
DUF4100
OB_MEIOB_N
Motif
Other DBs
NCBI-GeneID:
104718402
NCBI-ProteinID:
XP_010434447
LinkDB
All DBs
Position
10:10903497..10906472
Genome browser
AA seq
785 aa
AA seq
DB search
MEVILTAGAIGKIMSGEVTSEQDMMPVLQVTDLKHVKALQNPTSERFRMVLSDGTHLHQG
MLGADLNNLVKDGSLQSGSIIRLTHFVGSIVQQRRIVIVMILEVIKTKSDIIGNPVPIKP
SDQRGADSGIKLNTTGSEQQGRGESSGVRQVINTETGRSISPQVVQRQVFAIGSSVPAST
PSTRAFNNPSAGHVAPRQDHGRDPPTTYPRQPTYQPQPPPPLYANRAPVARNEAPPRIIP
INGLSPYSGRWTIKARVTNKAELREYSNPRGQGKVFNFDLLDADGGEIRVTCFNAVADQF
YDQIVVGNLYLISRGSLRPAQKNFNHLPNDYEITLDNASTIVQCYEEDAAIPRHQFHFRT
IGDIESMENNNIIDVIGIVSSISTTVAIMKKNGTETQKRSLQLKDMSGRSVEVTMWGNFC
NAEGQKLQSLCDSGRFPVLAVKAGKISEFNGKAVSTIGSSQLFIDPDFVEALKLKDWFER
EGKSVPCISISREFSGSARVDVRKTISQIKDEKLGTSEKPDWITVSATIIYMKFDNFCYT
ACPIMNGDRPCSKKVTSNGDGTWRCEKCDKSVDECDYRYILQLQIQDHTDITWVTAFQEA
GEEIMGMSAKDLYHVKYVNEEEEQFESIIRKVAFTKYILKLKVKEETYGDEQRVKATVVK
VDKVNYSSDTRTILDAMDKLRNREASSLPIKLEGSHHSAEAVNTSIGSAGTRDPSSVERR
DFGLHAHQSRQHGNQYSSGATSCNVCGNSGHVSANCPSVNEPQGQDRGTSGSYGGGPTRQ
HVGSY
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaattttgacggctggagcaatcgggaaaataatgagtggagaagtgacgagt
gagcaagatatgatgccggtgctacaagtgacggatttgaagcatgttaaggctcttcaa
aatccaacgagtgagaggtttaggatggttttatcagatgggacgcacttgcatcaagga
atgctcggagctgatctgaacaatcttgttaaagatggttctcttcaatccggttcgatt
attagacttactcatttcgtcggtagtatcgtccagcagcgaaggattgttattgttatg
atactagaggtgataaaaactaagtctgatataattgggaatcctgttccaataaagcct
agtgatcaacgtggagctgattctggtattaagttgaatacaactggttctgagcaacaa
ggtaggggtgagtctagtggtgtccgtcaagtaatcaataccgagactgggagaagtatt
tcacctcaagttgttcaaaggcaagtgtttgctattggttctagtgttcctgcatcaaca
ccttccactcgagcattcaacaatccgtctgcaggtcatgtagcccctaggcaggaccat
gggcgtgaccctccaaccacttatcctcgccagcctacttatcagcctcaaccaccacca
ccactgtatgcaaacagggcaccagtggcaaggaacgaagcacctcctaggataatccca
attaatggtcttagcccgtactcaggtaggtggacaatcaaggccagagtcacgaataaa
gcagaacttagggaatacagtaatccccgtgggcaagggaaagtgttcaactttgatctt
cttgatgctgatggtggagaaatacgtgtcacttgttttaacgctgtggctgatcagttc
tatgaccagattgttgttggtaatctttatctgatttccaggggaagtttgcgtcctgcc
cagaagaactttaatcatcttcccaatgattacgagatcacgctggataatgcatcaact
atagtacaatgctatgaggaggatgctgcaatcccgcgccatcagttccatttccgtacc
ataggtgatattgaaagcatggagaacaacaacatcattgatgtaattggtattgtgtca
tctatcagtactactgtagcaataatgaagaaaaacggaactgaaacacagaagagatca
cttcagttaaaggatatgtctggacgaagtgtggaggtaactatgtggggtaacttctgc
aatgccgaaggacaaaagctgcaaagtctttgtgattctggtcggtttcctgttcttgct
gttaaggcaggcaagattagtgaatttaatggaaaggcagtgagcaccattggatcaagt
caactgttcattgatccagattttgttgaagccctgaaactgaaggattggtttgagaga
gaagggaagagtgtcccttgtatctccatatctcgggagttttccgggagtgcccgagtt
gatgttcgcaaaacaatatcacaaattaaggatgagaaactagggacctcagaaaaacca
gactggatcacagtcagtgccactattatatacatgaagtttgacaacttctgctacaca
gcttgtcctatcatgaacggtgatcgtccgtgcagcaaaaaggtcacaagcaatggagat
ggcacatggaggtgcgaaaagtgtgataaaagtgttgatgaatgtgactacaggtatata
ttgcagctccagatacaggaccatacggatattacttgggtcacagcattccaggaggct
ggtgaagagataatgggcatgtctgctaaagatttgtatcatgtgaagtatgtaaatgag
gaggaggaacaatttgaaagtatcatccgtaaggttgcttttaccaagtacatcctgaag
ttgaaggtaaaagaagagacatatggcgacgaacaacgtgtgaaagcaacagttgtgaaa
gtggacaaggtaaactattcatcagataccaggactattttagatgccatggataaactc
aggaacagagaggcaagttctcttcccataaagctagaaggatctcatcacagcgctgag
gcagttaacactagtattggaagcgcaggaacccgagatccctcatcagtcgaaagaagg
gatttcggcttacacgcacatcaatcgcgtcaacatgggaatcagtatagtagtggtgct
actagctgcaatgtctgtggaaacagtggtcatgtttctgcaaactgtccaagcgttaac
gaaccacaagggcaggacagaggcacgtctgggagttatggaggaggaccaactaggcaa
catgttggaagctactga
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