Camelina sativa (false flax): 104719288
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Entry
104719288 CDS
T05044
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104719288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104719288
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
104719288
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Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
AF_0896_M
Motif
Other DBs
NCBI-GeneID:
104719288
NCBI-ProteinID:
XP_010435475
UniProt:
A0ABM0U407
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All DBs
Position
10:complement(18499920..18505753)
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AA seq
872 aa
AA seq
DB search
MSDGNMDVDDSPLSWKVKSLEALVDGSFSKSLSKLSSSSRLIPASRDFHFYYNFDEFKRP
IDEIAATSQSVLETIGESEQVWEKSMKFPGDVDEVDAEDWLCNVNDEFIEKFDVSVDEFK
RIRKKEEEIGRPVAYDGDDGFQMVYGKKKKPFGNVITGSAAKNTDGGGSMIDVKLAERER
NSSGKAKVPFHVPTIKKPQEEYNILVNNANQPFEHVWLERSEDDQRVMHPLEKLSVIDFV
DKDVNEMEPVKPLSLEETPFKFVQDVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCL
MQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLF
DTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPIPEEMIRYAREDTHYLLYI
YDGMRLELQRMANDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFKA
AQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLDIAKEMPLSVGKLRRMLKTKHPYIER
NVDSVVSVIRQSVQNYAAFESAALSLKDASPGTVMDKNIEPIIEKKDVYTGDVASPSLKD
NSLQVESTRGLNTVAASTSEGRGLGTGLFGSAKVSAAVRISKKPSSGLGALLGSAASKKK
FRTDEKVKEDVKLEQIRSSVNLSFPSFTEKLPESRSATGTSKVHGKPEEVSTTMPASVTK
EDGVTELKDDSKEASEIVGTSGRVSVCEVSSSETGDTILLENDDGDAKKVETEDEPMSLS
ELSTNFQKCFNSMKKSNKAQKQTEFINIEPFDYEAARKELKFGEGHKGRQGKKEAGAGQK
KKGSGPEQSEFGQGKRRQAFPASGNRSATFKS
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacggtaacatggacgtcgacgattcaccgctttcttggaaggtaaagtccctg
gaagcattagtcgatggttctttctcgaagtctctctcgaaactctcatcgtcttcccgt
ttgattccggcgagtagagatttccatttttactacaatttcgatgagttcaaacgccca
atcgacgagatagctgcaacctcgcagtcggttctcgagacgatcggtgaatccgagcag
gtttgggagaaatcgatgaagttccctggcgatgttgatgaagttgatgccgaggattgg
ctctgtaacgtgaatgatgaatttatcgagaaatttgatgtttcggttgatgagtttaag
aggattaggaagaaagaagaggaaattggtcggcctgtggcttacgatggggatgatggg
tttcagatggtttatgggaagaagaagaagccgtttggtaatgtgattactggctcggcg
gctaagaatactgacggtggtggttcaatgattgatgttaagttggctgagagggagagg
aattcatctggcaaagctaaagttcctttccatgtaccaaccataaagaagcctcaagag
gagtataatatcttggtgaacaacgctaatcaaccgtttgagcatgtttggttggagcgg
agcgaagacgatcagcgggttatgcatcccctggagaaactttcagtgattgacttcgtt
gacaaagatgtaaacgagatggaacctgttaagcccctttcattggaagagactccattc
aagtttgttcaagacgtgaaagatctgaaagaattagttgctaaattgcgtagtgttgaa
gagtttgcggttgatctggagcataatcagtatcgatcttttcaaggattgacatgcttg
atgcaaatttccaccagaacagaggattacatagttgatacatttaagcttcgtattcac
attggtccttacctaagggagatattcaaagaccccaaaaagaaaaaggtaatgcatgga
gcagatcgagatattatctggcttcaaagggacttcgggatatatgtctgcaatctcttt
gacacaggacaggcctcaagggtgctaaatttggagagaaatagcctggagtttcttttg
caacatttttgtggagttactgcaaataaagaataccaaaatgcagactggagaatacga
cccattccagaggaaatgataagatatgcaagagaagatacccactaccttttgtacata
tatgatggaatgagactagaactgcaaagaatggcaaatgatgacgcgcataccgattct
cctctgcttgaggtctacaagcggagttatgatgtgtgcacacaactatatgagaaagag
ctattgaccgaaaattcatatcttcatgtctatgggcttcaagcagcgggcttcaaagca
gctcaacttgccattgttgcggggctctgtgaatggagggatttcattgcacgtgcagag
gacgagagcactggttatgtgttaccaaacaaagttctccttgatatagccaaggagatg
cctcttagtgttggcaaattgcgccggatgttgaaaacaaagcatccttatatcgagcgg
aatgttgattcggtggtcagtgtcatcaggcagtcggtgcaaaattatgctgcatttgag
tctgctgctctatctttaaaagatgcgtctccaggaactgtaatggataagaatattgaa
cctattattgagaagaaagacgtttacacaggagatgtagcttctccaagtttgaaggat
aattctttgcaagttgaaagtaccagaggcctaaatacggttgcagcaagtactagtgaa
gggagaggtttaggcaccggcttatttggttctgctaaggtttctgcggctgttcggatc
tctaagaaaccaagcagtggtttaggagcattgctgggaagtgcagcatcgaagaagaaa
tttcgaactgatgagaaggtgaaggaagatgtgaagctcgaacagataagatcatctgta
aacctgtcattcccgtcgtttacagaaaaacttcccgagtcaaggtcagctactggaaca
tcgaaggttcatgggaagcctgaagaggtgtccactactatgccagcctctgttaccaag
gaggatggtgtgacagagttgaaagatgattcaaaagaagcctcagaaattgttggtact
tcgggtagagtttcagtgtgtgaagtatctagttccgagactggtgatactatactatta
gaaaatgatgatggtgatgcgaaaaaagttgagactgaagatgaaccaatgtctctctcg
gagttgtccacaaactttcagaagtgctttaactccatgaaaaagagcaacaaggcccaa
aagcagacggagtttataaacatagagccgtttgattatgaagcagcaaggaaagagttg
aaatttggggaagggcacaagggcaggcaaggaaagaaagaagctggagcaggtcagaaa
aagaaggggtctggtccggagcagtcagagtttggtcaaggaaaacgtcgtcaagccttt
ccggcatcggggaaccgaagtgcgacctttaaaagttag
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