Camelina sativa (false flax): 104720899
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Entry
104720899 CDS
T05044
Name
(RefSeq) pollen-specific leucine-rich repeat extensin-like protein 1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03015
mRNA surveillance pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104720899
09122 Translation
03013 Nucleocytoplasmic transport
104720899
03015 mRNA surveillance pathway
104720899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104720899
03041 Spliceosome [BR:
csat03041
]
104720899
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
104720899
Spliceosome [BR:
csat03041
]
Complex C
Other components
EJC/TREX
104720899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
PP2C_2
SAP_new25
Motif
Other DBs
NCBI-GeneID:
104720899
NCBI-ProteinID:
XP_010437098
UniProt:
A0ABM0U7F6
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Position
11:847881..851483
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AA seq
644 aa
AA seq
DB search
MSSSPFPILDNRPIDKWKVTELKEELKRRRLTTRGLKEELVRRLDEALRVEQEESERINS
AAVAAAEQANQEAQMFSFTGGDGDVTPDRNQSTPVAPDAAAFSTETTPVTAEKTPEPTEI
KTTVEASAPVETTQPPVFSEPEVNAVPFASEEDEKVDDVRGDISGLDDSSVFARHAPVVA
EAPSEQIVHRSDNKEPSSGLDGGADNKAQPTEAVLEKSAMYNQVSEVIPVTGFEVKSDCI
STDSVSNNEKIELKDNKIADNVKLDQNVSKSQEPSNVVGESHPMDVEAPLEQKISVGGGD
DSNAANTDMTKENNIIDAGDSEKLNLDRSSGDESMEDEPETKQTEPITSDDKSEKIEMLS
KGESRADIDARKGKALGNKSHPLVTSDKRKLPANDQETVGNNEPAKRRRWNSESIKIPEV
QATNSAAPTTTPRLTGLKRDFSGSDSSASEDGPKERVVPPSPKEPTNSLRIDRFLRPFTL
KAVQELLGKTGNVTSFWMDQIKTHCYVSYSSVEEAAATRQAVYNLQWPPNGGRFLTAEFV
GPEEVKAKLEAPLPPPPPQAQHQPQAQGPSRPPPTALPPPPPLAKPPQIVERLPPPPPLV
SEEQEPPIVTLDDLFKKTKAIPRIYYLPLSEEQVAAKLAANNNK
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcatcaccttttccaatcttggacaaccgaccaattgataagtggaaggttacg
gaattgaaagaagagcttaaacgacggagactaactacaagaggcttgaaggaggaattg
gttaggcgtctagatgaagctcttcgtgttgagcaagaagagtctgagagaatcaacagt
gctgctgttgctgctgctgaacaagccaatcaagaggctcagatgttttcttttactgga
ggcgacggcgacgttacacctgatcgaaaccaatccactcctgttgctccagatgcagcg
gcattcagcactgagactactccagttacagccgaaaaaaccccagaaccaactgagatc
aagacaacagttgaagcttcagctccggttgagactactcaaccccctgtgttttcagaa
ccagaggttaatgcagtgccattcgctagtgaagaagatgaaaaagttgatgatgttaga
ggagacatatctggtcttgatgatagttcagtgtttgcacgtcatgcaccagttgtggca
gaggcgcctagtgagcaaattgttcacagatctgataataaggaaccatctagtggtttg
gatggtggtgcggataataaggctcaaccaacagaggctgtgcttgaaaaatctgctatg
tacaaccaggtatctgaggtcatccccgttacagggtttgaggtaaaatctgattgtatt
tctactgattctgtgtcaaataatgaaaaaatagaactaaaggataacaaaattgctgat
aatgtcaaattagaccaaaatgttagtaagtctcaagaaccatcaaatgtcgttggcgaa
tcgcatccaatggatgttgaggcgccacttgagcagaagatatctgttggaggtggagat
gacagcaatgctgcaaacacagatatgaccaaagaaaataacattatcgatgcaggcgac
tcagaaaagttgaatttagatagaagttctggtgatgagtctatggaggatgagccagag
actaagcaaactgagccgattacatctgatgataagagtgagaaaattgaaatgctttct
aagggggaaagccgtgctgatatagatgctaggaaagggaaagcccttggaaataaaagc
catccactggtgacttctgataagagaaagctccctgctaatgatcaagaaactgttgga
aacaatgagcctgcaaagaggcgccgatggaactctgagagtattaaaattcctgaagta
caggccacaaatagcgctgcacccactacaacaccaaggttgactggtctgaagcgtgac
ttctcaggatctgactcttcggctagtgaggatggacccaaggaacgtgtggttcctcca
tctcccaaggagcctacaaattccctcaggattgatcgtttcctaaggccgttcacactg
aaagctgttcaggagcttctgggtaaaaccggaaacgtcactagtttctggatggaccaa
attaagacccattgctatgtatcatattcctctgttgaagaagctgcagcaacaagacaa
gccgtgtataacctacaatggccacctaatggaggccgctttctgacagctgaatttgtt
gggccagaagaagtgaaagcaaaactggaagctcctctgcctcctcctcctcctcaggct
caacatcagccacaggctcaaggtccttcacggccacctccaacagctcttccaccgccg
ccacctctggccaaaccacctcagatcgtagaacgtcttcctccacctcctcctctagtc
tctgaggaacaagaacctcccattgtcactcttgatgatcttttcaagaagacaaaagca
atccccaggatatattacttgcccttgtcagaggagcaagttgcagctaaacttgcagct
aataataacaagtga
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