Camelina sativa (false flax): 104721194
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Entry
104721194 CDS
T05044
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03020
RNA polymerase
csat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
104721194
09124 Replication and repair
03420 Nucleotide excision repair
104721194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104721194
03400 DNA repair and recombination proteins [BR:
csat03400
]
104721194
Enzymes [BR:
csat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
104721194
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
104721194
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
104721194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
104721194
NCBI-ProteinID:
XP_010437421
LinkDB
All DBs
Position
11:2434014..2441566
Genome browser
AA seq
1838 aa
AA seq
DB search
MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDIRLGTI
DRKVKCDTCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK
FKQAMKIKNPKNRLKKILDACKNKTKCDGGDEMDDVHNKDTDEPVKKSRGGCGAQQPKLT
IEGMKMIAEYKNTRKKTDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA
RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII
SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII
RDDGQRLDLRYLKKSSDHHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI
NLLRYSAWHSDSETGFITPGDTQVRIERGELLAGTLCKKALGTSNGSLVHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQEKK
LDPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYQKLETDRF
QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV
PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED
VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI
MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDVEGGFK
TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD
CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPISGT
PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSP
TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSLAYS
PSNARLSPSSPYSPTSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGY
SPTLPGYSPSSTGQYTPHEGDKNDKTGKDVSKNDKSNP
NT seq
5517 nt
NT seq
+upstream
nt +downstream
nt
atggatacacgtttcccgttctctccggccgaggtctccaaagtccgggtggtccagttt
ggcatcctcagccccgatgagatcaggcaaatgtctgttatacatgttgagcatagtgag
acgacagagaagggtaaacctaaggtgggagggttgagtgatatccggcttggtacaatt
gatcggaaggtgaaatgtgatacatgtatggctaatatggctgagtgccctgggcacttt
ggccatctcgagctcgccaagccaatgtatcatgtcggttttatgaagactgtgttaagt
atcatgagatgtgtctgcttcaattgctccaagattttagctgatgaggaggagcacaag
tttaagcaggctatgaagataaagaatcccaaaaacaggcttaagaagattctggatgct
tgcaaaaacaagaccaaatgtgatggtggtgatgaaatggatgatgtccataacaaagac
acggacgaacctgtaaaaaagagccgtggtggatgtggtgcacagcaaccaaagctgact
attgaaggtatgaagatgattgcagagtacaaaaatacaaggaagaaaaccgacgagccg
gatcagcttccagagcctgcagaaaggaaacagacacttggtgctgatagggttttgagt
gttttaaagaggattagtgatgcggattgccaactattagggttcaaccctaagtttgct
cgccctgactggatgattcttgaagtcctccctattcctccacctcctgtcagaccatct
gtaatgatggatgccacttccagaagtgaggatgacttgacccatcagctagccatgatt
attcgacacaatgagaacttgaaaagacaggaaaaaaatggggcgccagctcatattata
tcagagtttacacagctcttgcagtttcatatagctacgtattttgataatgagttacct
ggacagccaagggctactcaaaaatcagggaggcctattaagtcaatatgtagtaggctg
aaggcaaaggaaggcagaatcaggggaaatttgatgggaaaacgtgttgatttttcggca
cgtacggttattacaccagatccaacaataaatattgatgaacttggtgtaccgtggagt
attgctctgaatctcacatacccagaaacagtgactccatataacattgaaagattaaag
gagctcgttgattatgggccacatcctccacctggcaagactggagcgaaatatatcatt
agggatgatggccaaaggctagatcttcggtaccttaaaaagagcagtgatcatcatttg
gaacttggatacaaagttgagcggcatttacaggatggtgattttgttctgtttaatcgt
caaccaagtctgcacaaaatgtcaatcatgggtcacaggattcggattatgccatattcc
actttccgtctgaatttatctgtcacttcgccttacaatgctgatttcgatggggatgag
atgaacatgcatgtaccacaatcattcgagaccagagccgaggtgttagagctgatgatg
gttcctaaatgtattgtctctccccaggcgaatcggcctgtgatgggaattgtgcaggat
actctcctagggtgccgtaaaattacaaaaagagataccttcatagagaaggatgtattc
atgaatacgctaatgtggtgggaagatttcgacgggaaagttccagctcctgcaattctg
aagccacgtcctctgtggactggcaaacaagtttttaatcttatcataccaaaacagata
aatctgttgaggtactctgcctggcactcagattcagagactggattcataactccgggg
gatactcaagtgcgaattgaaaggggggaacttcttgccggaactctttgcaaaaaggcc
cttggtacatcaaatggaagtctcgtgcatgtcatttgggaagaggttggtcctgatgca
gccaggaaattccttggtcatactcagtggcttgtaaattactggcttctgcagaatggt
tttaccattggaattggtgacacaattgctgattcatctacgatggagaaaatcaatgaa
actatttctaacgcaaaaactgctgtcaaagatctaatccggcagttccaggaaaagaaa
ttggaccctgaacccggccgaactatgacagagacatttgagaacagggttaatcaggtc
ttgaataaagctcgtgatgatgctggaagtagtgctcaaaagagtttagcagaaaccaat
aaccttaaggctatggtgacagcaggatcgaaaggaagtttcattaatatttctcaaatg
acagcgtgtgtcggccagcaaaatgttgaagggaagcggattccatttggatttgatggt
cgaacattgccacatttcaccaaagatgattatggtcctgagagtcgtggatttgtagag
aattcgtaccttcgtggtctgacacctcaagagttctttttccatgccatgggaggaagg
gaaggtcttattgatactgctgtgaagacatcagaaactggatacatccagaggcgtttg
gtaaaggctatggaggatattatggttaaatatgatgggacagtccggaactcgttgggt
gatgttattcaatttctctatggtgaagatggtatggatgctgtatggattgaatcacag
aagctggattccttgaaaatgaagaaatcggagttcgataggactttcaagtatgagatc
gacgatgaaaactggaatcctacatacttaagtgatgaacatctcgaggacttgaaaggg
attcgggagttgcgtgatgtatttgatgcggaatatcagaaacttgagactgacagattc
caactcgggacagaaattgcaacaaatggtgatagcacttggccattgcctgttaacatc
aagaggcatatctggaatgcgcagaagactttcaagatcgacttgcgcaagatttcggat
atgcaccctgttgaaattgtagatgcggttgataaactacaagagaggctgttggttgtt
cctggtgatgatgcattgagtgtggaagcacagaaaaatgcaacactgttctttaacatt
ttgcttcgcagcactcttgctagtaaaagagtattggaggaatacaagctcagccgcgag
gcttttgagtgggtcattggtgaaatagaatcgaggttcttacagtcgctagtggcccca
ggagaaatgattggttgtgttgctgctcagtcaattggagaacctgctacgcagatgact
cttaacaccttccattatgctggtgtcagtgcaaagaacgttacactcggtgttcccagg
ttgcgtgaaattattaatgtggctaaaaggatcaaaacaccgtccctatcagtctatctc
acaccggaggctagcaaatcaaaagagggggctaagactgttcagtgcgctttggagtat
actactctcaggagtgtcactcaagctacggaagtctggtatgacccagatccaatgagt
actatcattgaggaggacttcgaatttgtgaggtcctactatgaaatgccggatgaagat
gtttctccggataaaatatctccttggctgcttcgtatagagttgaatcgcgagatgatg
gttgataagaaattgagtatggcggatattgcggaaaagatcaaccttgagtttgatgat
gatctgacttgcatattcaatgatgataatgcccaaaaactgatccttcgaattcgcatt
atgaacgatgaggggcctaagggagaattgcaagatgaatcagctgaagatgatgttttc
cttaaaaagattgagagcaacatgctgacagaaatggcgctcagaggaattccagacatc
aacaaagttttcattaaacaggttagaaaaagcaggtttgatgtggagggtggatttaag
acatctgaagagtggatgttagatacagaaggtgttaatctcttagctgttatgtgccac
gaagatgtggatccaaagaggacaacaagcaatcacttgattgaaattattgaagttctc
ggaatcgaggcagttcgccgtgctttgttggatgaactccgggttgtgatttcctttgat
ggctcttatgtgaattaccgccatcttgccatcttgtgtgataccatgacctatcgcggt
catctaatggctatcactcgacatggtatcaatagaaatgacactgggcctctgatgaga
tgctcttttgaagaaacagttgatattctgttagatgctgcagcttatgctgagacagac
tgcttgcggggtgttactgagaatataatgctgggtcaacttgcaccaattggaacagga
gattgtgaactgtatctgaatgatgagatgctgaagaatgctattgaactccagctccct
agctatatggatggtctagaatttggaatgactcctgctcgttcaccaatatcaggcact
ccttaccatgaaggcatgatgtccccgaactacctgttgagtccaaatatgcgtttgtcg
ccaatgtcagatgcacagttttctccatatgttggcggaatggccttttcgccttcttca
tctccaggctatagcccgtcatctcctggctacagtcctacttcccctggttacagtccc
acgtcacctggatatagcccgacttctcccggttatagtcccacttcgcctacctacagt
cccagttctcctggctatagtccaacaagccctgcttattctcctacaagtccttcctat
tctcccacctctccgagctacagccccacgtctccaagctacagtccaacgtctccaagc
tacagtccaacgtctcctagctacagcccgacatcgccaagttacagcccgacttcgcct
gcttacagcccaacatcacctgcttatagcccgacctcacctgcatacagtccaacctct
ccttcttacagtccaacatcgccatcttacagtccaacatcgccttcttacagccctacc
tcaccatcctatagtcccacatcaccatcttatagtcctacttcacctgcatacagcccc
acttctcctggctacagcccaacttcaccaagttacagtccaacatcaccaagctatggt
cctacgtctccaagctacaaccctcagtcagctaaatacagcccatctcttgcttactct
cctagcaatgcaagactatcaccatctagtccctacagtcctacatctccaagctacagc
ccgacatctccatcatactcacccacatctccatcttattcaccttcgagtccaacatac
agtcccagcagcccttacagctcaggagcaagccctgactacagcccaagcgcaggctac
tcgccaacacttccgggttattcaccatcatccacgggtcagtatacaccacatgagggc
gataaaaatgacaagactgggaaagatgtcagtaagaatgataaaagcaacccttga
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integrated database retrieval system
