Camelina sativa (false flax): 104723402
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Entry
104723402 CDS
T05044
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
csat
Camelina sativa (false flax)
Pathway
csat03022
Basal transcription factors
csat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
104723402
09124 Replication and repair
03420 Nucleotide excision repair
104723402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csat03021
]
104723402
03400 DNA repair and recombination proteins [BR:
csat03400
]
104723402
Transcription machinery [BR:
csat03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
104723402
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
104723402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
104723402
NCBI-ProteinID:
XP_010440070
LinkDB
All DBs
Position
11:14878219..14881724
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AA seq
452 aa
AA seq
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MPQVKIIAKSFMDMVASLPAIKLDKLYNNVFICEAILRSLPPLAKKYVLQMLYIDVPVPS
TMMEEWVLADGASKHRVAIDRLIQLRIFSEIVDRKRGTSYSLNRTFQNNLQKHIISGGVL
PREPMNSHNAIKLPSLQELEAYAHKKWESFLLQLINSGHGEKLTGISESMMKIFQRGLLS
QRDKDGPRLTESGFQFLLMDTNAQLWYIIREYISNAEERNVEPADLISFLLELSFHVTGE
AYNSNTLTEVQRKTLKDLEDLGLVKLQQGMKDSWFIPTKLATNLSVSLADSSSRKEGFVV
METNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFL
QQNSHPRCADRVPSIPENVTDQIRLWEGDLKRIEMTQAHFYDEFPSKDVFEAACDFAREW
GGLLWEDSKRMRLVVKSEVHNQMRDFLHTQSK
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagttaagatcatcgcgaagagtttcatggacatggtggcgtctcttcccgcc
atcaagcttgacaagctctacaacaatgtcttcatctgcgaggctattctcaggtctttg
ccacctcttgccaagaagtatgtattgcagatgttatacattgatgttcctgtaccttct
acaatgatggaggagtgggtgcttgcagatggcgcatctaagcatagagttgctattgat
cgtctgattcaattacgcattttttcagaaattgtagataggaaaaggggaaccagttac
agcctcaaccgtacatttcagaacaatcttcagaaacatattatttccggtggagtttta
cctagagagcctatgaattcccacaatgctattaagcttccaagtctacaagaactcgag
gcctatgcccataagaaatgggagagtttcttgctacaactcataaattcgggtcatggt
gagaagctaactggcatcagtgaatctatgatgaaaatcttccagcgaggtttattgagt
caaagagataaagatggcccaagattaactgagagtggctttcagtttttgctgatggat
acaaatgcccagctttggtacattattcgagaatacatatcgaatgccgaggaacgaaat
gtagaaccagcagacttgatttcgtttttgttggagcttagttttcatgttactggtgag
gcatataactcaaatacgttgacagaggttcaaagaaaaacactcaaggaccttgaagac
ttgggattagtcaagcttcaacagggaatgaaagacagttggtttattcctacgaaactg
gctacaaatttatcagtcagtctggcagattcatcatcgcgaaaagagggttttgtcgtg
atggaaacaaacttcaggatgtatgcgtactccacatctaagttacagtgtgaaatttta
cgtctgtttgcgaggatagagtaccaacttccaaaccttattgcttgtgcaattacaaag
gaaagtttgtacaatgcatttgacaatggcatcacatcagaccagattataacttttctc
cagcaaaattctcatccacgatgtgctgatcgagtcccatctattccagaaaatgtcaca
gatcagatacggctttgggagggtgatctgaagagaatcgagatgacccaagcccacttc
tacgatgaatttccttcaaaagatgtgtttgaggcagcttgtgactttgctcgggaatgg
ggaggccttctttgggaagactctaagagaatgcgacttgttgtgaaatctgaagttcac
aatcaaatgcgtgattttcttcatacccaaagcaaataa
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