Camelina sativa (false flax): 104723998
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Entry
104723998 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104723998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104723998
03009 Ribosome biogenesis [BR:
csat03009
]
104723998
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104723998
Spliceosome [BR:
csat03041
]
Complex A
U1 snRNP components
U1 related factors
104723998
Complex B
104723998
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
Pre-60S particles
Helicases
104723998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
Motif
Other DBs
NCBI-GeneID:
104723998
NCBI-ProteinID:
XP_010440777
UniProt:
A0ABM0UGE9
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All DBs
Position
1:complement(2381995..2386933)
Genome browser
AA seq
1125 aa
AA seq
DB search
MATTEATPASAGPRYAPEDPTLPKPWKGLIDGSTGILYYWNPETNVTQYERPSAPPPALH
AGAPPHSATTPKLAQIPIPSSGQGHQAQHEQAKHVGHVSQQHGLQQQPQQFPSQHVRPQL
MHQQQQHPGQQMSQQSGQQQFPQQQSQSMVSQPHGHPSVQSYQPTSQQQQQQQVMQNQHS
QMPQQLSHQYAHPQQHYMGYRPHMQPQGLQNSHQAPQGGHQGQQFSSQQEYNSLAPKRDG
DEFHGGKKAGFSQPHLPNSEGSPSQNAPFEANAASQRTNANLSMAQKYNGPQANMQHPVA
VTQFKQPEANLIHHQLGPRPQNQMDPTMLHPKSHTSPFQSNKTYENNVQSRPGNESYVNT
RMEGPVRGAQPHHPAALPKDIRIGGGPPANADPAMGQTGHGTYGHAGPAFPQKSLARPHF
VTSPDVPHLSPVESYRKQHEVTTTGENIPAPYITFEASGLPAEILRELLSAGFPSPTPIQ
AQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQ
IQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKKIDFQQV
SLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNI
GRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTKRLCDHLARSVGR
HFGAVVIHGDKSQGERDWVLGQFRTGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVED
YVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMRGGGGPGY
SQDRRGMANRFDSGSGGSRWDSAGGFGGRGGGFGGRDGGFGGREGGFGGREGGFGGREGG
FGGREGGFGGREGSFGGREGGFDGRGGGFGTRDDSFGRGGNRGRGFTGPDAGRMNVGGRG
GFSRFGNNNMDGGGFGRGGGRGFGRGVGRFDNRRGRSRSRSPDLVRPRRRSLSYSRSRSR
SRSYSRSRSRSWSRSRSRSPRHSRDRGGHNRSRSYSRSPSPVYERRDRRPRMSGFDIKPP
IESVVNPDMNAVETVVPTAMSERQGNGVVESEIEAALVRPVVDEP
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggccacaacagaagctactccagcttctgctggtccaagatatgctccagaggaccca
actcttcccaaaccatggaaaggacttattgatggaagcactggaattctatattactgg
aatcctgaaacgaatgtcactcagtatgaaagaccttctgcgcctcctccagctttgcac
gctggtgctcctccgcactctgccacaacgcccaagctcgctcagattcctataccttct
tcaggacaaggtcaccaagctcagcacgaacaagcaaaacatgttggtcacgtgtctcaa
cagcatggtttacaacaacagccacagcaatttccgtcccaacatgtaagaccccaattg
atgcaccagcagcagcagcatccgggccagcaaatgtctcaacaatcaggtcaacaacag
tttccccaacaacagagtcagtcaatggtctcgcagccacatggacatccttctgtgcag
tcatatcagccaacttcgcagcagcagcagcagcagcaagtcatgcagaatcagcattca
caaatgcctcagcagctgagccatcagtatgcacatccacaacaacattacatgggttat
cggcctcacatgcaaccacaagggcttcaaaattcacatcaggcacctcagggtggtcac
cagggtcagcagttttctagccagcaagagtacaactcgttggctccaaagagggatggg
gatgagttccatgggggtaagaaagctgggttttctcaaccccatttgccaaattctgaa
ggttcaccatctcaaaatgccccctttgaagccaatgcagcatcacaaagaacaaatgca
aacttgtctatggctcagaaatacaatggacctcaagcaaacatgcaacatcctgttgca
gtcacacagtttaaacagccagaggctaacctgattcaccaccagcttggacctaggcct
caaaatcaaatggacccgacaatgttgcacccgaagtctcatacttcccctttccaatca
aataaaacatatgagaataatgtacaatctagacctgggaatgaatcttatgttaacaca
agaatggaagggccggttaggggtgcccaaccacatcatcctgctgcattgcctaaggat
ataaggataggtggtggtccacctgcaaatgctgatcctgccatggggcaaacagggcat
ggaacatatggacacgctggtccagcttttccacagaaatccttggcgaggcctcatttt
gtcacatctcctgatgttcctcatctctcacccgttgaaagctaccggaaacaacatgaa
gtcacaacaactggcgagaacattccagcaccatacattacatttgaagctagtggtctc
cctgctgaaattctaagagagttgctttctgctggatttccatcaccaacaccgatccag
gctcaaacatggccaattgctctgcagagcagggatatagttgcaattgcaaaaactggt
tctggtaaaactttgggatacttgatccctgccttcattcttctacggcactgtcgtaac
gactcccgaaatggccccacagttttgatcctagctcctactcgggagctagccacacaa
atacaagatgaagcccttaggttcggccggtcttccaggatatcatgcacttgtttgtat
ggtggagctccaaagggtcctcaattgaaagagttggaacgaggagctgatattgtggtg
gcaactcctgggcgtctaaatgatatactggagatgaagaagattgatttccagcaggtt
tcccttcttgtgcttgacgaagcagaccgaatgcttgacatgggttttgaaccccaaatc
cgtaagattgtgaatgaaatacctcctcggagacagactcttatgtacacagcaacttgg
ccaaaagaagtaagaaaaattgcaagtgatcttcttgtgaaccctgtccaagttaacata
ggcagggtagatgagttggctgctaacaaagcgataacacagtatgttgaagtagtccct
caaatggagaaagagagacgtttggagcaaatccttaggtcgcaagaaagaggttcaaaa
gttataatattttgctctacaaagaggctttgtgaccatcttgcacgtagtgtcggacgt
cattttggcgctgttgtgatccatggagacaagtctcaaggtgagagagattgggtactt
ggccagttccgaaccggtaaatcttgtgtattaatagctactgatgttgccgcccgggga
ctcgatataaaagacataagagttgtgatcaactacgattttccaactggcgttgaagac
tatgtccaccgtattgggagaaccggtcgagccggtgcaactggagtggcattcactttc
ttcacagagcaagattggaaatacgcgcctgatttgatcaaagtcctcgaaggagcgaac
cagcaagtaccgcctcaagtaagggacattgcaatgcgtggtggtggtggtcctggttat
agccaggatcgaagaggtatggctaaccggtttgactctggtagtggtggtagccgttgg
gattctgctggagggtttggtggccgtggtggtgggtttggtgggcgtgatggtgggttt
ggtgggcgtgagggtgggtttggtggccgtgaaggtgggtttggtggccgtgagggtggg
tttggtggccgtgaaggtgggtttggtgggcgtgaaggtagttttggtggccgtgaaggt
gggtttgatggccgtggtggcggatttggaaccagagatgactcatttggacgtggcggg
aatcgtggtcggggtttcactggtcctgatgctggtcgtatgaatgttggtggtagaggc
ggatttagtcggtttggcaataataatatggatggcggaggctttggtcgtggtggtggt
agaggctttggtcgtggtgttggaaggtttgacaacagaagaggtagaagtcgtagcaga
agtcctgatttggttcggccaaggcgacgtagcctgagctatagccggagtagaagccgg
agccggagctacagtcgtagtcgtagcaggagttggtcacgttcaaggagtcgcagccct
agacatagccgtgaccgtggtggtcataacaggagcagaagctatagccgtagtcctagt
ccggtttatgaaagacgagatagacggccacgaatgtctgggtttgatattaaaccacca
attgagtctgtagtgaacccggacatgaatgcggttgaaaccgtggttcctacagccatg
tctgagagacaagggaatggggttgttgaatcggagatagaagcggctttagtacgacca
gtggttgatgaaccataa
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integrated database retrieval system
