Camelina sativa (false flax): 104724020
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Entry
104724020 CDS
T05044
Name
(RefSeq) protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104724020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104724020
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
104724020
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
104724020
NCBI-ProteinID:
XP_010440775
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Position
11:complement(21689523..21695348)
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AA seq
872 aa
AA seq
DB search
MSDGNMDVDDSPLSWKVKSLEALVDGSFSKSLSKLSSSSRLIPASRDFHFYYNFDEFKRP
IDEIAATSQSVLETIGESEQVWEKSMKFPGDVDEVDAEDWLCNVNDEFIERFDVSVDEFK
RIRKKEEEIGRPVAYDGDDGFQMVYGKKKKPVGNVITGSAAKNTNGGGSMIDVKLAERER
NSSGKAKVPFHVPTIKKPQEEYNILVNNANQPFEHVWLERSEDDQRVMHPLEKLSVIDFV
DKDVNEMEPVKPLSLEETPFKFVQDVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCL
MQISTRTEDYIVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLF
DTGQASRVLNLERNSLEFLLQHFCGVTANKEYQNADWRIRPIPEEMIRYAREDTHYLLYI
YDGMRLELQRMAKDDAHTDSPLLEVYKRSYDVCTQLYEKELLTENSYLHVYGLQAAGFKA
AQLAIVAGLCEWRDFIARAEDESTGYVLPNKVLLDIAKEMPLSVGKLRRMLKTKHPYIER
NVDSVVSVIRQSVQNYAAFESAALSLKDASPGTVMDKNIEPIIEKKDVYTGDVASPSLKD
NSLQVESTRGLNTVAASTSEGRGLGTGLFGSAKVSAAVRISKKPSSGLGALLGSAASKKK
FRTDEKVKEDVKLEQIRSSVNLSFPSFTEKLPESRSATGTSKVHGKPEEVSTTMPASVSK
EDGVTELKDDSEEASEIAGTSGRVSVCEVSSSETGDIILLENDDGDAKKVETEDEPMSLS
ELSTNFQKCFNSMKKSNKAQKQTEFINIEPFDYEAARKELKFGEGQKGRQGKKEAGAGQK
KKGSGPEQSEFGQGKRRQAFPASGNRSATFKS
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacggtaacatggacgtcgacgattcaccgctttcttggaaggtaaagtccctg
gaagcattagtcgatggttctttctcgaagtctctctcgaaactctcatcgtcttcccgt
ttgattccggcgagtagagatttccatttttactacaatttcgatgagttcaaacgccca
atcgacgagatagctgcaacctcgcagtcggttctcgagacgatcggtgaatccgagcag
gtttgggagaaatcgatgaagttccctggcgatgttgatgaagttgacgccgaggattgg
ctttgtaacgtgaatgatgaatttatcgagagatttgatgtttcggttgatgagtttaag
aggattaggaagaaagaagaggaaattggtcggcctgtggcttacgatggggatgatggg
tttcagatggtttatgggaagaagaagaagccggttggtaatgtgattactggctcggcg
gctaagaatactaacggtggtggttcaatgattgatgttaagttggctgagagggagagg
aattcatctggcaaagctaaagttcctttccatgtaccaaccataaagaagcctcaagag
gagtataatatcttggtgaacaacgctaatcaaccgtttgagcatgtttggttggagcgg
agcgaagacgatcagcgggttatgcatcccctggagaaactttcagtgattgacttcgtt
gacaaagatgtaaacgagatggaacctgttaagcccctttcattggaagagactccattc
aagtttgttcaagacgtgaaagatctgaaagaattagttgctaaattgcgtagtgttgaa
gagtttgcggttgatctggagcataatcagtatcgatcttttcaaggattgacatgcttg
atgcaaatttccaccagaacagaggattatatagttgatacatttaagcttcgtattcac
attggtccttacctaagggagatattcaaagaccctaaaaagaaaaaggtaatgcatgga
gcagatcgagatattatctggcttcaacgggacttcggcatatatgtctgcaatctcttt
gacacaggacaggcctcaagggtgctaaatttggagagaaatagcctggagtttcttttg
cagcatttttgtggagttactgcaaataaagaataccaaaatgcagactggagaatacga
cccattccggaggaaatgataagatatgcaagagaagatacccactaccttttgtacata
tatgatggaatgagactagaactgcaaagaatggcaaaggatgacgcgcatactgattct
cctctgcttgaggtctacaagcggagttatgatgtgtgcacacaactatatgagaaagag
ctattgaccgagaattcatatcttcatgtctatgggcttcaagcagcgggcttcaaagca
gctcaacttgccattgttgcggggctctgtgaatggagggatttcattgcacgtgcagag
gacgagagcactggttatgtgttaccaaacaaagttctccttgatatagccaaggagatg
cctcttagtgttggcaaattgcgtcggatgttgaaaacaaagcatccttatatcgagcgg
aatgttgattcggtggtcagtgtcatcaggcagtcagtgcaaaattatgctgcatttgag
tctgctgctctatctttaaaagatgcgtctcctggaactgtaatggataagaatattgaa
cctattattgagaagaaagacgtttacacaggagatgtagcttctccaagtttgaaggat
aattctttgcaagttgaaagtaccagaggcctaaatacggttgcagcaagtactagtgaa
gggagaggtttaggcaccggcttgtttggttctgctaaggtttctgcggctgttcggatc
tctaagaaaccaagcagtggtttaggagcattgctgggaagtgcagcatcgaagaagaaa
tttcgaactgatgagaaggtgaaggaagatgtgaagcttgaacagataagatcatctgta
aacctgtcattcccgtcgtttacagaaaaacttcccgagtcaaggtcagctactggaaca
tcgaaggttcatgggaagcctgaagaggtgtccactactatgccagcctctgtttccaag
gaggatggtgtgacagagttgaaagatgattcagaagaagcctcagaaattgctggtact
tcgggtagagtttcagtgtgtgaagtatctagttccgagactggtgatattatactatta
gaaaatgatgatggtgatgcgaaaaaagttgagactgaagatgaaccaatgtctctctcg
gagttgtccacaaactttcagaagtgctttaactccatgaaaaagagcaacaaggcccaa
aagcagaccgagtttataaacatagagccgtttgattatgaagcagcaaggaaagagttg
aaatttggggaagggcaaaagggcagacaaggaaagaaagaagctggagcaggtcagaaa
aagaaggggtctggtccggagcagtcagagtttggtcaaggaaaacgtcgtcaagccttt
ccggcatccgggaaccgaagtgcgacctttaaaagttag
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