Camelina sativa (false flax): 104724363
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Entry
104724363 CDS
T05044
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein, cytoplasmic and nuclear
KO
K13126
polyadenylate-binding protein
Organism
csat
Camelina sativa (false flax)
Pathway
csat03015
mRNA surveillance pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104724363
09123 Folding, sorting and degradation
03018 RNA degradation
104724363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104724363
03041 Spliceosome [BR:
csat03041
]
104724363
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104724363
mRNA cycle factors
Stress granule specific factors
104724363
Spliceosome [BR:
csat03041
]
Complex C
Other components
Complex C specific factors
104724363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_5
Motif
Other DBs
NCBI-GeneID:
104724363
NCBI-ProteinID:
XP_010441124
UniProt:
A0ABM0UH87
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All DBs
Position
11:complement(27079127..27083082)
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AA seq
431 aa
AA seq
DB search
MLEKLFVFELSRKLAKKLCFGRVDFASANEAKKALEKKNGEYLHDYQIFLREDYNAPYPF
RPKYCMEHKVWNLRQESLPIEEDGTPPDFVEEVLFVANLSPQTKILHIKDFFKNVGEVVR
VRLIVNHEGKHVGYGFVDFASANEAKKAPETKNGEYLHDHKIFLEVAKTAPDPPRPKYNL
AEKLCYEDYLRRQNLVIEEDVAVEGLDESPNFVEAVAVRKXTLFVSGLSRESDISHIINF
FIDVGEVVHVRLIVDDTGEHVGDGFVEFASSHEAEKVRVVYSNDXKYLSSHMKNIQVSYY
HSIDFFKDVGEVVCSRLIVDHNGEHVGCGFVEFASANEAEMALEKNGFKLQDNKFFLDVA
EIAPYPLRPKYNLAEKLWSKVESLLIKKEKEEGEEEDDEDDLETKPNLKKHEVPMMGGYC
SKKIIFCFNDL
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgctggagaagttgttcgtgttcgaactatcccgcaagttggctaagaagttgtgcttt
ggccgtgttgactttgcatctgccaacgaagcaaagaaggcgctggaaaagaagaatggt
gaatatttgcacgactatcagatatttcttagagaggattataacgctccataccctttc
cgacccaaatattgcatggaacacaaggtctggaaccttcgacaagaaagccttccgata
gaagaagatggcacacctcccgattttgttgaggaagtactctttgttgccaatctctct
ccccagactaaaatattgcatatcaaagacttcttcaaaaatgttggagaagttgttcgt
gttagacttattgtaaaccacgagggtaagcatgtgggttatggctttgttgacttcgct
tctgctaacgaagcaaagaaggcgccggaaacgaagaatggtgaatatttgcacgatcat
aagatctttcttgaagtggctaagacagctccagaccctccacgacccaagtacaacctt
gcagagaagctttgttacgaagactatcttcgacgacaaaaccttgtgatagaagaggac
gtggcagtggaaggacttgacgaatctcccaattttgttgaggcagttgctgtaagaaaa
tagacgctctttgtttctggtctctctcgcgaatctgatatatcacatatcatcaatttc
ttcatagatgttggagaagttgttcatgttcgacttattgtagacgacacgggcgagcat
gtgggtgatggctttgttgagtttgcttcttctcacgaagcagagaaggtgagagtagtt
tatagtaatgattaaaagtatttaagtagtcatatgaaaaatatacaagtaagttattat
cacagcatcgatttcttcaaagatgttggagaagttgtttgttctcgacttattgtagac
cacaatggtgagcatgtgggctgtggctttgttgaatttgcttctgctaacgaagcagag
atggcgctggaaaagaatggtttcaaattgcaggataataagttttttcttgacgtggct
gagattgctccataccctctccgacccaagtacaaccttgcagagaagctttggtcgaag
gtagaaagccttctgataaaaaaagaaaaagaagaaggagaagaagaagatgatgaagat
gatttggagaccaaaccgaatctgaagaaacatgaggtacctatgatgggtggatactgc
agtaagaagattattttctgtttcaacgacttatag
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