KEGG   Camelina sativa (false flax): 104726161
Entry
104726161         CDS       T05044                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
csat  Camelina sativa (false flax)
Pathway
csat03013  Nucleocytoplasmic transport
csat03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csat00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    104726161
  09122 Translation
   03013 Nucleocytoplasmic transport
    104726161
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csat03019]
    104726161
   03041 Spliceosome [BR:csat03041]
    104726161
Messenger RNA biogenesis [BR:csat03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     104726161
Spliceosome [BR:csat03041]
 Complex C
  Other components
   EJC/TREX
    104726161
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    104726161
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR3_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st eIF2A NBCH_WD40 Beta-prop_HPS5 WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 WDR90_beta-prop_4th Tricorn_2nd Beta-prop_Nup120_160 Beta-prop_WDR41 B-prop_COPA_B_2nd Beta-prop_ACSF4 CNH Beta-prop_WDR11_1st PROPPIN DUF7099 WD_LRWD1
Other DBs
NCBI-GeneID: 104726161
NCBI-ProteinID: XP_010443252
UniProt: A0ABM0V4M0
LinkDB
Position
11:complement(43399815..43402701)
AA seq 314 aa
MEETIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLE
LKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQAELSGENINITYKPDGT
HVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPSL
KPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTISF
NYSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKYN
TDEGVFRIFGFDST
NT seq 945 nt   +upstreamnt  +downstreamnt
atggaggagacgattccgtttaagagcttacatagccgagaatatcaaggtcacaagaag
aaggtacattcagtagcttggaattctaacggaacaaagcttgcttcgggttctgttgat
caaacggctcgtatttggaacatcgaacctcacggtcatagtaaagctaaggaccttgaa
ttgaaggggcatactgatagtgtggatcagctatgttgggatcccaaacattcagatctt
gttgctactgcctctggggataaaagtgttcgtctctgggatgctcgcagtgggaaatgc
acacagcaggcagaacttagtggagagaatataaatattacctacaaacctgatgggaca
catgttgctgttggtaatagggatgatgagcttaccattctggatgtccgtaagtttaaa
cctctacacaggcgaaaattcaattatgaggtaaatgagattgcttggaacatgccagga
gattttttcttcttgactactggacttggcactgttgaagttctttcatatccatctctt
aaaccacttgacactctcacagcccacacagccgggtgttattgcattgcaattgatcct
aagggaagatattttgctgtcgggagtgcggattctttagtcagcctttgggatatctca
gatatgctttgtttaagaacatttaccaaacttgagtggcctgtcaggacaataagcttc
aactattcgggagagtatattgcttcagccagtgaagatttattcatagatattgctaat
gtccaaaccgggcggacggtgcatcagattccatgtcgtgctgcaatgaatagcgttgag
tggaatcccaaatacaatttactagcatacgcaggtgatgacaagaatcccaagtataat
actgatgaaggtgttttccggatatttggttttgacagcacatag

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