Camelina sativa (false flax): 104726161
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Entry
104726161 CDS
T05044
Name
(RefSeq) THO complex subunit 3
KO
K12880
THO complex subunit 3
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104726161
09122 Translation
03013 Nucleocytoplasmic transport
104726161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104726161
03041 Spliceosome [BR:
csat03041
]
104726161
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104726161
Spliceosome [BR:
csat03041
]
Complex C
Other components
EJC/TREX
104726161
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104726161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Beta-prop_EML_2
EIF3I
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_WDR3_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR75_1st
eIF2A
NBCH_WD40
Beta-prop_HPS5
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
WDR90_beta-prop_4th
Tricorn_2nd
Beta-prop_Nup120_160
Beta-prop_WDR41
B-prop_COPA_B_2nd
Beta-prop_ACSF4
CNH
Beta-prop_WDR11_1st
PROPPIN
DUF7099
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
104726161
NCBI-ProteinID:
XP_010443252
UniProt:
A0ABM0V4M0
LinkDB
All DBs
Position
11:complement(43399815..43402701)
Genome browser
AA seq
314 aa
AA seq
DB search
MEETIPFKSLHSREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLE
LKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQQAELSGENINITYKPDGT
HVAVGNRDDELTILDVRKFKPLHRRKFNYEVNEIAWNMPGDFFFLTTGLGTVEVLSYPSL
KPLDTLTAHTAGCYCIAIDPKGRYFAVGSADSLVSLWDISDMLCLRTFTKLEWPVRTISF
NYSGEYIASASEDLFIDIANVQTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKYN
TDEGVFRIFGFDST
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atggaggagacgattccgtttaagagcttacatagccgagaatatcaaggtcacaagaag
aaggtacattcagtagcttggaattctaacggaacaaagcttgcttcgggttctgttgat
caaacggctcgtatttggaacatcgaacctcacggtcatagtaaagctaaggaccttgaa
ttgaaggggcatactgatagtgtggatcagctatgttgggatcccaaacattcagatctt
gttgctactgcctctggggataaaagtgttcgtctctgggatgctcgcagtgggaaatgc
acacagcaggcagaacttagtggagagaatataaatattacctacaaacctgatgggaca
catgttgctgttggtaatagggatgatgagcttaccattctggatgtccgtaagtttaaa
cctctacacaggcgaaaattcaattatgaggtaaatgagattgcttggaacatgccagga
gattttttcttcttgactactggacttggcactgttgaagttctttcatatccatctctt
aaaccacttgacactctcacagcccacacagccgggtgttattgcattgcaattgatcct
aagggaagatattttgctgtcgggagtgcggattctttagtcagcctttgggatatctca
gatatgctttgtttaagaacatttaccaaacttgagtggcctgtcaggacaataagcttc
aactattcgggagagtatattgcttcagccagtgaagatttattcatagatattgctaat
gtccaaaccgggcggacggtgcatcagattccatgtcgtgctgcaatgaatagcgttgag
tggaatcccaaatacaatttactagcatacgcaggtgatgacaagaatcccaagtataat
actgatgaaggtgttttccggatatttggttttgacagcacatag
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integrated database retrieval system