Camelina sativa (false flax): 104726918
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Entry
104726918 CDS
T05044
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104726918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csat03041
]
104726918
03009 Ribosome biogenesis [BR:
csat03009
]
104726918
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104726918
Spliceosome [BR:
csat03041
]
Complex A
U1 snRNP components
U1 related factors
104726918
Complex B
104726918
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
Pre-60S particles
Helicases
104726918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
104726918
NCBI-ProteinID:
XP_010444189
LinkDB
All DBs
Position
11:complement(47264941..47268464)
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AA seq
591 aa
AA seq
DB search
MSFYDRRFADPNSYRQRSGAPVGSSQPMDPSAAPYNPRYSGGGGGYGTSHVMTGDNSGYN
NRYPSFHPPTSGFSVGRGGGGGRGGYGQYGDRNGGGNWGGGGGSSNRELDSVSLPKQNFG
NLVHFEKNFYVESPSVQAMTEQDVAMYRTERDISVEGRDVPKPIKLFQDANFPDNILEAI
AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPI
VLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLI
DMLECQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVESL
ARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLALLKQLMDGSKILIFVETK
RGCDQVTRQLRMDGWPALAIHGDKNQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIK
CVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELIKILQEAGQVVPPTL
SALVRSSGYGGSGGGRNFRSRGGGRGGGGGFGDKRSRSTSNFVPHGGKRTW
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgagcttctatgatcgtagatttgctgatccgaattcatatcgccaacgctctggcgcc
ccagttggttcgtctcagccaatggatccttccgccgcaccatacaacccacggtacagt
ggtggtggaggaggatatgggacgtcacatgtaatgacaggtgacaattccggttataat
aatcggtacccatctttccacccacccactagtggtttctctgttggtcgcggcggtggt
ggcggaagaggtggatacggtcaatacggggatagaaacggcggagggaattggggagga
ggtggtggatcgagtaatagagagctagatagcgtttctcttcccaagcagaattttggg
aatcttgtacatttcgagaagaacttctacgttgagagtccttctgtgcaagccatgact
gagcaagatgttgccatgtacagaaccgagagagatatatctgttgaaggtcgtgatgtt
cctaagcctattaagttgttccaagatgctaatttcccagataatattctcgaagcaatt
gctaaattgggatttactgagccaacacctatacaagctcagggatggccaatggcttta
aagggtagggatttgattggtattgctgagactggctctggtaagacattggcttacttg
ttaccagctttggttcacgttagtgcacaacctcgattaggtcaagatgatggacccata
gtgttaatattagcaccaacgagagaattagctgtccagatacaagaggaatcaaggaag
ttcgggttgcggtctggtgttagaagtacttgtatctatggtggtgctcctaaaggacca
cagattcgcgatcttagaagaggtgttgagattgtaattgctacacctggtcgtttgatc
gatatgctggagtgccaacacactaatttgaggagagtgacttaccttgtactggatgag
gctgacagaatgttggacatgggatttgaaccccaaattagaaagattgtatctcagatc
cgacctgatagacagacacttctttggagtgcaacatggccacgagaggttgaatctctt
gccaggcagtttctacgagatccatataaggccattattggatcaacagatctaaaagct
aaccagtctatcaaccaagtaatcgagattgtaccaacgccagagaaatacaacaggctc
cttgcactgcttaaacagttaatggatgggagtaaaattctaatatttgtggagacaaag
agagggtgtgatcaagtgactagacaattgagaatggacggatggccagcccttgccata
catggtgacaagaaccaatcggaaagagaccgagttttggcagaatttaagagtggacga
agcccgataatgactgccactgatgtagcagcaaggggacttgatgtgaaggacataaag
tgtgttgttaactatgacttcccaaacaccttggaggattacatccataggattggtcga
acagggcgtgcaggagctaaaggaatggcctttacattctttacacatgacaatgctaag
tttgcaagagagcttatcaagatacttcaagaagctggtcaagttgtacctccaactctc
tccgcactagtgcgatcatctggttatggaggttctggtggtggacgaaacttccggtca
agaggaggaggacgtggtggtggtggtgggtttggagataaacggtcgagatcaacgtcg
aactttgtacctcacggtggaaagaggacttggtag
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