Camelina sativa (false flax): 104727650
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Entry
104727650 CDS
T05044
Name
(RefSeq) U3 small nucleolar RNA-associated protein 20-like
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csat03009
]
104727650
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
104727650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
HEAT_EF3_N
BrxB
Motif
Other DBs
NCBI-GeneID:
104727650
NCBI-ProteinID:
XP_010445040
LinkDB
All DBs
Position
11:complement(5144422..5155561)
Genome browser
AA seq
2049 aa
AA seq
DB search
MPIVASQWAPIFALKSSSLLTFLREFLLKDHSVVKAFTNNILSAINNMIWESPEEVIPLL
LTLCESQQTSHDGVNIINQIFEGKYERIHSFLEKNLKEIQQNIENTGLVQIDEAKLAIIW
GVVNCYPYFRVDSSLLICFKKTLRQHLGVSDADTFSAPELMWQSLLGTALRSCYKLPGRI
NHSGLEEALSFAKDYKSCVQVLSPVADFLDYIHRPALAHDDRSKAYPELQAKKAVEAFDI
FSENLRHPNKDVRLMTLRILCHFETLSSDPSFEEHPPKKKMKTEEIIKSLPKGNVLQLLR
SVEETAPTVDTSRMLVGLISTIQKDLSAGRIHEAYVKLVLNGMLGLLHNRYLDLWGPASE
CLAVLVRNHTGAVWSDFVCYLGQCQLKFETLHDHSENANQSISERHTDLMGRFNSFLFPP
SDSTPIATVLSQLLQTLQKASSVAQSRASEILPLLLKFLGYNSENALSVGSYNRQVCKGE
DWKRILIQWLTLLKLMKNTRSFCFSQFVNDVLQNRFLDDNDAEIQTNVLECLLLSNDFLL
PHRQHLLNLIKPKELREELTTWNLSEDIVEPHRSQIFSIVIRILMPKVRTLKSSASRKHT
SIRHRQAVLCFTSQLDVNELALFFALLIKPLNIISEETMDSFWSSGESSMDYFHNSNFLK
YFTVDTISTLSRNQKSGFLHVIQHILEVFDESRVRPFLDFLMGCVVRLLGNSAPNIDEER
NIDSLAANPSTSYDKENASINHDQAGTALKQFKELRSLCLKIIAHVLDKYEDCDLGSEFW
DLFFSAVSPLIKSFKQEGSSSEKPSSLFSCFLSMSRSRNLFTLLSREESLVPDIFSVLTV
TTASEAIKSSALKFIENLLCLENEFGEDANMISGFLDPYIDALINSLHSLFIGDIFKRKS
VKYHGEREMKILKLLSKRVRDPSHAMKYLDVLLSFLDKSVKDSDIRREALLAIQDIIPFL
GIESTSKIINIISPLLVDADCEVRLCICDLLESIAEKDSSLVDVAKRIRDMNAISAMEVD
DLDYEKIVNAYVEINADFFNKSSEQHTKIILSQSIYNVSSESIMLRGSAQKLLSSFIDFS
ASILREEASSHSELGKEVKIADVSWTGDRILFILRSFILKHMGDAINRGGIIIKEWFLLI
REMVTKLPDAGNLSAFRPLCSEDENVDFFKSIVHIQVHRRGRAISRFTNVVKDSSLPEGV
LRKLLVSVFFNILLDGQDGKENNVRNACTEALASVSAHMSWKSYYALLNRCFREMNKHQK
KGKLLLRLICLILDKFHFAKDSYPQEAEEIRTCLQKIVFPKMQKLINSDSDNVNVNSSVA
ALKVLKLLPEDVMDSNLSSIVHKVASFLKNRLESIRDEARLALSACLKELGLEYLQIVVN
VLRAILKRGSEVHVLGHTLSFILSRCLSKSTCGKLDHCLVDLLAVVETDILGEVAEQKDV
EKFASKMKETRKRKSFETLKLIAENVTFRSHGLTLLSPVTAQLQRHLTPKIKTNLENMLR
QIAAGIESNPSVDQGDLFVFIYARVDDGINNRNGPGDQVSSLPSRKKSISRDLKKTVGLI
SGAKSCPHLITVFALDLLHNRMKKLKCDNADKELLSMLDPFVRLLTGCLSSKYEDIVSLS
LRCFTSLIRFPLPSLMSEADEVKTVLLTIAQSAVSSSSPLVQSCLKLLTTLLDNKNITLS
SEQLKMLVQFPMFVDLENLESDTSFIALSLLKAIVKRKLVVPEIYDIATQVSELMVKSQS
DPIRKKCKQILLQFIVHYTLSEKRLEQHVNFLLENLRYEYSTGREAVLDMLEALILKFSE
PNLGKQSDLDRQSKTLFLQLVLCLANEIDKDVRYHVGALIKLLIGRMSTDQVDSSLLYCL
CWYKQQNLRACAAQVLGFFIDTMKKTFRKHIYNILQDAKTILESAVSASSVQLQDTVEEG
SLPYWKEAYYSLVMIEKMLEQFPDLSFGKDLEDIWKMVFKFLLHPHVWLREISCRLLNRY
FVALAGKKRAESQTLVANSLLEKPSSLFMVAVSLCFQLKEQSTRDNVDVDLLTANIKSEI
PQFVSLLSL
NT seq
6150 nt
NT seq
+upstream
nt +downstream
nt
atgccaattgttgcttcgcaatgggctccgatttttgccttgaaaagttcaagtttgctg
acttttttgagggagttcctactgaaggatcattcagttgtgaaagcctttacaaataat
atattaagtgcaattaacaacatgatttgggagtctcctgaggaagttattcctctgtta
ctaacactgtgtgagagtcaacaaacaagtcatgacggggtgaacatcataaatcaaata
tttgagggtaaatatgagagaattcattcgttcttggaaaagaatttaaaagagattcaa
cagaatatcgagaatactggattagttcaaattgacgaggccaagttggctatcatttgg
ggagttgtcaactgttatccttattttagagtggattcatcattactgatttgctttaag
aagactctcagacagcatttgggagtgtcggatgcagacacttttagtgccccagaattg
atgtggcagagcttacttggtactgctttgaggtcatgttacaaactgccgggaagaatc
aaccacagtggtctagaggaagctttgtcttttgctaaagattataagtcatgtgtgcaa
gtgttgtctcccgtggccgattttttggattatatccacaggccagcattagctcatgat
gacaggtccaaggcatatccagaacttcaagcaaagaaggctgtagaagcttttgacata
ttttctgaaaatttgcgtcacccaaacaaagacgtccgacttatgactctgaggattttg
tgccattttgaaacactatcgtctgacccttcttttgaagagcatcctcctaagaagaaa
atgaaaactgaagagattataaaatctcttcctaaagggaatgttcttcagttattacgc
tcagtcgaagaaactgctcccacagtggatactagtcggatgttggtcggtttgatctct
acaatacaaaaggatctctccgctggcaggatacatgaggcatatgtgaagcttgtattg
aatgggatgttgggactattacataatagatatttggatttgtggggtccagcgtctgag
tgtcttgcagttcttgtgaggaatcacacaggtgcggtgtggagtgattttgtttgttat
ttggggcagtgccaactaaaatttgagacactccacgatcatagtgagaacgcgaaccaa
agcatctcagagaggcatacggatctgatgggccgtttcaattcatttctctttccaccg
tctgatagcacacctattgcaacggtgttatctcaattgctacagaccttacaaaaggcg
tccagtgttgctcagtctcgcgcttctgaaattctccctttgttgttgaaatttctggga
tataacagcgaaaatgctttgagtgtcggatcatataatcgccaagtttgtaaaggagag
gactggaagaggattcttatacaatggttgactttgctgaagttaatgaagaatactagg
tcgttttgttttagtcaatttgtaaacgacgttcttcagaataggttcctggatgataat
gatgctgaaatacaaactaatgttctagagtgccttctgttgtcgaatgacttcttactc
ccacaccgccaacatttgttgaatttgatcaaacctaaagaattgagagaagaactcaca
acctggaacttgtctgaagacatcgtagaacctcacagatcacaaattttttctattgta
attcgcatccttatgccaaaagttagaacattgaaaagttcggcttcacggaagcataca
agtatccgtcaccggcaggcagttctttgctttacatctcagctggatgttaatgaactt
gccctgttctttgccttgttgataaagcctttgaacatcatatcagaggaaacaatggac
tcgttttggagttctggcgaaagttctatggactatttccataactcgaatttcctgaag
tatttcactgttgatactatttcgacattatccaggaatcagaaatctgggtttcttcat
gtcatccaacatatccttgaagtctttgatgaatcccgtgtccgaccttttctagacttt
ttgatgggatgtgttgtccggctattgggaaattctgctccaaatattgatgaagaaagg
aacattgattcattggcagccaacccatcaacttcatatgataaagaaaatgcttcaata
aatcatgaccaggctggtactgctttgaagcagtttaaagagttgagatccttatgtctg
aaaatcattgctcatgttcttgataaatatgaggattgtgatcttggctccgagttctgg
gacctcttcttctcggcagtgagtcctttaattaagagtttcaaacaggagggttctagt
agtgagaaaccaagttccttgttctcatgcttcttgtcaatgagtagaagccgtaatctc
ttcaccctattatctcgggaggagtctcttgttccagacattttttcagttctaacagtc
accacagcttcagaagctataaagtcttctgccttaaaattcatagagaatctgctttgc
cttgaaaatgaatttggtgaggatgccaatatgatcagtggattcttagatccttatata
gacgcactgattaacagcttgcattctcttttcattggggatatatttaaaaggaaatca
gtcaagtatcatggggaaagagagatgaaaattcttaaattattgtcaaagcgtgtgcga
gatccctctcatgctatgaagtatttggacgtcttgctgtctttcttggataaaagtgta
aaagattcggatattcgtcgtgaggctttgctagctattcaggacatcataccgttcctt
gggattgagagtaccagcaaaattataaatataatctctcctctacttgttgacgctgac
tgtgaagttagattatgcatttgtgatctacttgaatctattgcagaaaaagactcttct
ctggttgatgtggcgaagcgcattcgcgatatgaatgccatctcagccatggaagttgac
gacctggactatgaaaagatagttaatgcttatgtggagattaatgcagatttttttaat
aaatcctcagagcagcacacaaagatcatactctcacagagtatatacaacgtatcatca
gaatccattatgttaaggggtagcgcacagaagctcttgtcttctttcattgatttttca
gcctcaatacttcgcgaagaggcttcatcacactctgaacttggtaaagaggtcaaaata
gctgatgtaagctggacaggagatcgaatactgttcattttaagaagtttcattttgaaa
cacatgggagatgcaataaacagaggaggcatcataataaaggagtggtttcttttgata
cgggagatggtgaccaaacttccagatgccggaaatctttctgcattcagaccgttatgc
tctgaagacgagaatgtagacttttttaaatctattgttcacattcaggtacaccgtaga
ggaagggcaatttcacgttttacaaatgtggtcaaagatagcagtctgcctgagggagta
ttgagaaaacttttggtttcggtctttttcaatattttgcttgatggacaagatggaaaa
gagaataatgtccgaaatgcatgcacagaagcacttgcatctgtatctgcacatatgagt
tggaagtcatactatgctctattgaatcggtgttttcgtgagatgaacaagcatcaaaaa
aagggaaaactcctgctgcgacttatctgcttgattttggataagtttcattttgcaaaa
gatagttacccgcaggaggcggaggaaattaggacttgcctacagaaaattgtgttccca
aagatgcagaagctgataaattctgattctgataacgttaatgttaacagcagtgtggct
gcactgaaggttctaaaactacttcctgaagatgtaatggactcaaacctgtcctccata
gttcataaagttgccagttttttgaagaatcggttggagagcatacgtgatgaagccaga
ttggctctgtctgcttgtttgaaagaacttgggctggagtacctgcaaattgtagtcaac
gttttacgtgctatcttaaaacgaggatctgaggtgcatgtgctggggcacactctcagt
tttattttatcaaggtgcctgtccaaatctacgtgtgggaagttagatcattgtttggtt
gatctccttgctgtggtagaaaccgatatccttggagaggttgctgaacagaaagacgtg
gaaaaattcgcatccaaaatgaaagaaacaagaaaacgaaagtcatttgagactctgaaa
ctgattgctgaaaatgtaacgttcagaagccatggattgacgttactctctccggtcact
gctcagctacagcggcatctaactccgaagatcaaaactaatctggagaatatgttaaga
caaattgcagctggtatcgaaagcaatccatctgttgaccaaggagatctttttgttttt
atatatgcccgtgttgatgatggcattaacaataggaatggtcctggagatcaagtctct
tctctaccatccagaaagaaaagtatttcaagagatctgaaaaagaccgttgggttgatt
tctggtgctaagtcatgcccacatcttataactgtgtttgctcttgacttattgcataac
cgaatgaagaagttgaaatgcgacaacgctgataaagagctgttgtccatgttagatcca
tttgtcagactacttactggatgcttgagttctaaatatgaggatatcgtatctttatct
cttagatgttttacttcactaataaggtttccactgccctccctcatgtctgaagcagat
gaagtaaaaacagtattgttaaccattgctcagtctgcagtgagttccagcagtccactt
gtgcagtcatgcctgaagctgttaacaacgcttctcgacaataaaaatataactttatca
tctgagcagttgaaaatgttggttcagttccccatgtttgttgatctggagaatctggag
tcagacacatcctttattgctctttcactcctcaaggccatcgtgaaacggaagcttgtg
gttccagagatatatgacattgctactcaggtttcagaattgatggtaaaaagtcagtcg
gatccaatccgcaagaaatgtaaacagatactgttgcaatttatcgtccactatacgctt
tctgaaaaacgtttagagcaacatgtgaactttctgctggaaaatctgaggtatgaatat
tcaactggaagagaagcagttcttgacatgcttgaagcgctaatcttgaaattctcagaa
cctaatctcggcaagcagtcggatcttgatcggcagtcgaaaacattgttccttcaactt
gttctttgtttggccaatgagattgataaagatgtgcggtatcatgttggtgctttgata
aaacttctgataggtcgcatgagtacagatcaagttgattccagtctcttgtactgtttg
tgttggtataagcagcagaacttacgggcttgtgcagcacaggtattgggattttttatt
gacaccatgaagaaaacattccggaagcatatctacaatatattgcaggatgctaaaacg
attctggagtctgctgttagtgcttctagcgtacagttgcaggatactgttgaagaaggc
agtcttccttattggaaggaagcatactactcactggttatgatagagaagatgctcgag
caatttccagatttaagtttcggaaaagacttagaggatatttggaaaatggtgtttaag
ttcttgttgcacccacacgtatggttgcgagagatatcctgccggcttctaaatcgttat
tttgtggcattggctgggaagaaaagagcagaatctcagacattagtggccaattctctt
ttagagaagccaagtagcctgttcatggtggctgtttctctttgcttccagttaaaggag
caatccaccagggacaacgttgatgttgatttgctcacagccaatattaaatcagagata
cctcagtttgtgagtctactgtccttgtga
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integrated database retrieval system
