Camelina sativa (false flax): 104728505
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Entry
104728505 CDS
T05044
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
csat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104728505
03015 mRNA surveillance pathway
104728505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104728505
Enzymes [BR:
csat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104728505
5.6.2.5 RNA 5'-3' helicase
104728505
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104728505
mRNA cycle factors
Common to processing body (P body) and stress granule
104728505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
nSTAND3
DEAD
NPHP3_N
NAT10_TcmA_helicase
UvrD-helicase
PhoH
ATPase
SRP54
Ribosomal_S13_N
AAA_16
AAA_22
AAA_25
Viral_helicase1
AAA
AAA_32
Motif
Other DBs
NCBI-GeneID:
104728505
NCBI-ProteinID:
XP_010445773
UniProt:
A0ABM0USX0
LinkDB
All DBs
Position
11:complement(30087611..30095102)
Genome browser
AA seq
1118 aa
AA seq
DB search
MDSQQSDLFDTVSQPDTVADAYNFLEFDTQGDSEFDYPEFGSPTAWPTPSDSISIADASD
RGGGGAAADHHSEASSPSSLSAVAGNGAKAGRGGVSSSIQVDALAAGIGNLNFEETGDDD
GFDYGQNDFTEHACKYCGISNPACVVRCNVASCRKWFCNSRGNTSGSHIVNHLVRAKHKE
VCLHRDSPLGETILECYNCGCRNVFLLGFISAKTDSVVVLLCRDPCLNVNALKDMNWDLS
QWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDATLEDLEKPGVDD
EPQPVQPKYEDAYQYRNVFAPLIKLEADYDKMMKESQSKENLTVRWDIGLNKKRVAYFVF
PKEENELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPIDVNHG
FSVDFVWKSTSFDRMQGAMKNFAVDETSVSGYIYHQLLGHEVEAQMVRNTLPRRFGVPGL
PELNASQVNAAKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD
QLAGKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGE
LSSSDEKKYKNLKRATEREITQSADVICCTCVGAVVLVGDHCQLGPVIMCKKAARAGLAQ
SLFERLVLLGIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPMP
NRPMFFYVQLGQEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQIGVITPYEGQRAY
IVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVA
LTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPRKIYND
RRLFYGGGAGMMGNDNFGSGNPNADRRGSRGRAGGSYLPSGPPNGARPGLHPAGYPMPRV
PLSPFPGGPPSQPYAIPTRGPVGVVPHAPQPGNHGFGAGRGTSVGGHLPHQQATQHNVGT
IGPNLNFPLDSPNSQPSPVGPLSQPGYGNQAFRDGFSMGGISQVVFLYNLSKTPAQGLPN
SLYSQPFSHYNTQPLNLSGPQQSQPNQTSQNPKHPYNG
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atggattctcaacagagcgatctctttgacaccgtatcgcagcctgacacggtggccgac
gcgtataactttttggaattcgatactcaaggtgattcggagtttgattacccggagttt
ggatcaccgacggcatggcctaccccatctgattctatttcaatcgctgacgcttccgat
cgtggtggaggaggagctgctgcggatcatcattccgaggcttcgtcaccttcttccctc
tctgccgttgccgggaatggtgcaaaagcgggacgtggtggtgttagtagtagtattcag
gttgatgcattggccgctggtatcggaaatttgaacttcgaggagactggagatgatgat
ggtttcgattatggtcagaatgatttcacggagcacgcttgtaagtattgtggtatctcg
aaccctgcttgcgtggttaggtgtaatgtggcttcctgtagaaagtggttctgcaattca
agggggaacacctcgggctcgcatattgtgaatcatctggttcgagctaaacacaaggaa
gtttgtctccatagagacagtccactaggggaaacaattcttgaatgctacaactgtggg
tgtcgaaatgtctttctcctcggtttcatctcagcaaagacagacagtgtcgtcgtcctt
ctctgtagagatccttgtttaaatgttaatgccctcaaggatatgaactgggacctaagt
cagtggtgtcccttgattgacgataggtgtttcctcccctggcttgttaaggtcccatca
gagcaggaacagctgcgggcacgccaaattagcgcacagcaaataaacaagatagaggaa
ttatggaagacaaatccggatgctactcttgaagaccttgaaaaacctggtgtagacgat
gaacctcagcctgttcaacctaagtatgaagatgcatatcagtatcgaaatgtgtttgca
cctctaatcaagcttgaagcagactatgacaagatgatgaaagagtctcaaagcaaggaa
aacctcacagttcggtgggatattggtcttaacaagaagcgtgttgcatacttcgtcttt
ccgaaggaggaaaatgaattacgattggtgccgggtgatgaactacgtctgcgctactcg
ggagatgctgctcatccagcctggcaatcagttggacatgtgatcaagctaacggcacaa
gaggaggttgctcttgaactccgagctaatcagggagttccgattgacgtgaaccatgga
ttcagtgttgattttgtttggaaaagtacaagctttgatcgaatgcagggagcaatgaag
aactttgcggtagatgaaacaagtgtgagtggttatatttaccatcagttgctcggacat
gaagttgaggcgcagatggttcgtaacacactacctagacgttttggggtacctggtctt
ccagaactgaatgcatctcaggttaatgcggcaaaaagtgtccttcaaaagcccatcagc
ttgatccaaggtccacctggcacgggtaaaactgtgacttctgcagcaattgtgtatcac
atggcaaaacagggccagggacaggttctcgtttgtgccccaagtaatgttgctgtagac
caactagctggaaaaattagtgctactggtttaaaggttgttcgcctttgtgcaaaatct
agggaagctgtaagttctcctgtagagcatttaacccttcactaccaggtacggcatttg
gacacatctgagaagagcgagctgcataagctacagcagttgaaagatgaacaaggtgag
ctgtcgagcagtgatgaaaagaaatacaaaaacttgaaaagagcaacagaacgtgagata
acccagagtgctgatgtcatatgctgcacgtgtgttggtgctgttgttcttgttggtgat
cattgtcagcttggccccgtcattatgtgcaagaaagcagctcgtgctggcttggcacag
tctctctttgaacgacttgtgcttcttggtatcaaaccaatcagattgcaggttcaatat
cgtatgcatccagctttgtccgagttcccatctaacagcttctatgaaggaactctacag
aatggagtcacaattattgagaggcaaacaacagggattgatttcccatggcctatgcct
aaccggcccatgtttttctatgttcagctgggacaagaggagatcagtgctagtggaaca
tcgtatcttaatagaactgaggctgctaatgtggagaaacttgtgactgctttcttaaag
agtggagttgtccccagtcagattggtgtgataactccatatgagggacaaagggcatac
attgttaattacatggcaagaaatggttctctccgacagcaactttacaaggaaattgag
gttgccagtgttgattcttttcaaggaagggaaaaagattacatcatattgtcctgtgtg
agaagtaacgagcatcagggcattggattccttaatgatccacggaggctcaacgttgca
cttacgcgtgctcgttatggaatagttattcttggaaacccgaaggttcttagtaaacag
cctctgtggaatggattgttgacacattacaaggaacatgagtgtttggtcgaaggacct
cttaataatttaaagcagagcatggtacagtttcagaaaccaagaaagatttacaatgat
cggaggctattttatggtgggggcgctggcatgatgggaaatgataattttggttcgggt
aatcctaatgctgacagaagaggcagtcgaggaagggctggtggttcctatcttccttct
ggcccacctaatggtgctagacctggactacacccagctggctacccgatgccgagggtt
ccactttcaccctttcccggtggtcctccttctcagccatacgctattccaactcgtgga
cctgtgggtgttgttcctcatgctcctcaacctggaaatcatggttttggagctggtcgt
gggacttcagttggaggccatcttccgcaccaacaagctacccaacataatgttggaact
attggccctaatctaaacttcccgcttgatagtccaaatagccagccttcacctgttggt
ccgctatcccaacctggatatggtaaccaagcattcagggatggattttctatgggtggc
atatcacaggttgtcttcttatataatttgtctaaaactccggctcagggtctcccaaat
tcgctttactcgcagcctttctcacactacaacacacagccactaaacctttcaggccca
cagcaatctcaacctaaccagacgtcacaaaacccaaaacatccttacaatggctga
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