Camelina sativa (false flax): 104729166
Help
Entry
104729166 CDS
T05044
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
csat
Camelina sativa (false flax)
Pathway
csat04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104729166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csat04121
]
104729166
Enzymes [BR:
csat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
104729166
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
HECT type E3
104729166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
HEAT_EZ
PDS5
Htt_N-HEAT_1
Motif
Other DBs
NCBI-GeneID:
104729166
NCBI-ProteinID:
XP_010446370
LinkDB
All DBs
Position
12:complement(194776..203903)
Genome browser
AA seq
1871 aa
AA seq
DB search
MASIPCRAPSASLFFSTTNTISSSSSSSLAPSSSTTRSRSSRSAAAATAPAPAPTPMDTS
TDSSGFRRGGRGNRGNDNTNSDKGKEKEHDVRIRERDRAREQLNMDAAAAAAARSADDDD
DDNDSEDGNPGFMHPNMSSASSALQGLLRKLGAGLDDLLPSSGIGSASSSHLNGRMKKIL
SGLRSEGEEGKQVEALTQLCEMLSIGTEDSLSTFSVDSFVPVLVGLLNHESNPDIMLLAA
RALTHLCDVLPSSCAAVVHYGAVSCLVARLLTIEYMDLAEQSLQALKKISQEHPTACLRA
GALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDYVMEAVPLLTNLLQYHDSKVLE
YASICLTRIAEAFAPYPEKLDELCNHGLVTQAASLISTSNSGGGGQASLSVSTYTGLIRL
LSTCASGSPLGFRTLLLLGISSILKDILLGSGVSANASVSPALSRPADQIFEIVNLANEL
LPPLPEGVISLPTSSNTFVKGSSQKKSCPSTSGKQEDALKISPREKLLGDQPELLKQFGL
DLLPVLVQIYGSSVNGTIRHKCLSVIGKLMYFSSSEVIQSLIGDTNISSFLAGVLAWKDP
QVLVPALQVAEILMEKLPETFSKVFVREGVVHAVDQLVLVGKPSHASPTDKENDCVPGSA
RSRRYRRRSSNANSDGNQSEEPKNSASVNIGANSLDSSTASFMLRETVSSCAKAFKDKYF
PSDGGDLDVGVTDDLLHLKNLCKKLTAGIDDHKVKGKGKSKASGASLGDFSASKEEYLIG
IISEILAELSKGDGVSTFEFVGSGVVAALLNYFSCGYFSKEKISELNFPKLRQEGLRRFK
AFLEVALPFDGNEGKVPPMTVLIQKLQNALSSLERFPVVLSHPSRSLSGSARLSSGLSAL
AHPLKLRLCRAPGEKTLRDYSSNIVLIDPLASMAAVEEFLWPRVQRSESGLKPAVPAGNT
EAGALPSGAGVSSPSSSTPASTTRRHSSRSRSAINIGDTSKKDPVHEKGTSSSKGKGKGV
MKPAQADKVPQTRNSAQRRAVLDKDTQMKPPSGDSSSEDEELDISPVDIDDALVIEEDDI
SDDEDDDNEDVLDDSLPMCTADKVHDVKLADSVDDDGLATSGRLMNPASGGTSGTAAAAA
RGSDSTDAGIGNTYGSRGALSFAAAAMAGLGAASGRGIRGSRDLHGRTLYRSSDEPSKLI
FTAGGKQLSRHLTIYQAVQRQLMLDEDDDDRFGGSDLISSDGSRFNDIYTIMYQRPDSQV
NRLSVGGASSTTPSKSTKSATTNSSVESQSHKASLLDSILQGELPCDLEKSDSTYNVLAL
LRVLEGLNQLCPRLRAQTVSDRFAEGKIASLDDLSTTAAKVPHEEFVNSKLTPKLARQIQ
DALALCSGSLPSWCYQLTRACPFLFPFQTRRQYFYSTAFGLSRALNRLQQQQGADGSGST
NEREMRIGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYT
LLSHDLQKVALGMWRSNSGDKVSMQIDRDEIEDGKSYAVRDREIVQAPLGLFPRPWPSTA
DVSEGGQFHKVIEYFRLLGRVMAKALQDGRLLDVPLSTAFYKLILGQELDLHDIVLFDAE
LGKTLQELRVLVARKHYLEAVGGDNGSTVSDLCLRGSRIEDLCLDFTLPGYPEYILRPGD
EIVDITNLEEYISLVVDATVKRGVARQIDAFRSGFNQVFDITSLQIFTPSELDYLLCGRG
ELWEAETLTEHIKFDHGYTAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAV
LNPKLTIVRKHSSTSSAAVNGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYA
INEGQGSFDLS
NT seq
5616 nt
NT seq
+upstream
nt +downstream
nt
atggcttccattccatgcagagctccttctgcgagcttattcttctctaccaccaacaca
atttcttcttcttcttcttcctcacttgccccttcttcctccaccacccgctctcgctct
tctcgctctgccgccgccgctactgctcctgctcccgctcccactcctatggacacctcc
actgattcttctgggtttcgccgaggtggacgaggtaaccgtggcaacgataacaccaat
tccgacaagggcaaggagaaggaacatgacgtcaggattagggagagagaccgagccaga
gaacaactcaacatggatgctgccgccgccgccgctgctaggagcgctgacgacgacgat
gacgacaatgacagtgaggatggcaaccccggtttcatgcatcctaacatgagctctgcc
agcagcgctttacaaggcttgctcagaaagcttggagctggattggatgacttgctccct
tcttccggtatcggctctgcttcttcttcccacttaaacggacgcatgaagaagattctc
tctggcctccgctctgaaggtgaagagggcaaacaggtcgaggctttaacccagctctgc
gagatgttatccatcgggaccgaggactcacttagcactttctctgttgactccttcgtc
cctgttcttgtgggtctcctcaaccatgaaagcaatcccgacattatgcttcttgcagcc
agggcccttacccatctttgtgatgtcttgccgtcttcttgtgctgctgttgtacattac
ggcgctgtttcttgcttagtcgccagattgctaaccattgaatacatggacttggccgag
cagtccctgcaagctctcaaaaagatatctcaggagcacccaactgcctgtttgcgagct
ggtgctcttatggctgtcctctcgtatctggatttcttctccactggtgttcagcgtgta
gcactatctactgctgctaatatgtgcaagaaactaccttctgatgcatctgattatgtt
atggaagctgtaccattactgacaaacctacttcagtatcatgattcgaaggttttggaa
tatgcttctatatgcctgactcggattgccgaagcatttgcaccgtatcctgagaaattg
gatgaattatgcaaccatggcctggtgactcaagctgcgtctcttatttccacgagcaat
tcaggaggtggtgggcaagcatctcttagtgtgtcaacttacacggggttaatccgatta
ctttctacctgtgcgagcgggtcacctcttggatttaggacattacttcttctcggtatt
agtagcattcttaaggatattctgttgggttctggtgtctctgctaatgcatctgtatcc
ccagcactgagccggcctgcagatcagatttttgagatagtcaacctagcgaatgagctc
ctccctccattgcctgaaggagttatctctcttcctactagctcaaatacttttgtgaaa
ggttcaagccaaaagaaatcttgtccaagtacttcagggaaacaagaagatgctctaaaa
atttcacctagagaaaaattacttggtgatcaacctgaacttctgaagcaatttggattg
gatcttcttccagttttagtgcagatctatggatctagtgtcaatggtactattcgccat
aaatgtctctcagtcattggaaagctgatgtatttcagcagttcagaagtgatacaatct
ctaattggcgacacaaatatttcgagcttcttggctggtgtcttggcatggaaagacccg
caggtcttggttcctgctctacaagttgcagagattttgatggaaaagcttcctgaaaca
ttctcgaaagtgtttgtgagggaaggggtggtccatgctgtagatcaacttgtcttggtt
ggtaaaccttctcatgcctcacctactgataaggaaaatgactgtgtgcccggatctgca
cgatctaggcgttatagacggcgaagtagtaatgccaattccgatgggaaccagtcggaa
gagcctaagaattctgcgtccgttaacataggtgcaaactctctggattcttctacagcc
agctttatgttgagggaaacagttagttcatgtgccaaagcattcaaagacaagtacttc
ccatctgatggtggggatcttgatgttggagttacagatgatctcttacatctgaagaat
ctttgcaaaaagctaactgctggtatagatgatcataaagtgaaaggaaagggaaaatct
aaagcgtctggggctagccttggcgatttctctgctagcaaggaagagtacttgattggt
atcatttctgagatacttgccgagctaagtaaaggggatggtgtctcaacttttgagttt
gttggcagtggtgtggttgcagcattgcttaactacttttcttgtggctacttttccaaa
gagaagatctcggaacttaattttcccaaacttcgccaggaggggctcagaaggttcaaa
gcctttctggaagttgctcttccatttgatggtaatgagggaaaggtccctcctatgaca
gttttgattcagaaacttcagaatgctttatcatcactggaacgctttcccgttgtccta
agccatccctcaaggtcactaagtggaagtgctcggctctcctcgggactgagtgctttg
gcacatcctttaaagttgcgattatgccgtgcacctggagagaagacactacgtgattac
tcctctaatattgtactgatagatccattggcaagcatggcagcagtggaggaatttctc
tggccccgagttcaacgcagtgaatctggtttaaagccggcagtgcctgctggaaataca
gaggcaggcgcattacctagtggtgctggtgtttcatcaccatcttcgtcaactccagct
tcaaccactcgtcgtcattcttctagatctagatctgcaattaacataggtgatacctca
aagaaagatcctgtgcatgagaaaggtacgagttcatcgaaaggaaaaggtaaaggcgtg
atgaagccggctcaagcggataaggttcctcaaacgaggaacagtgctcaaaggagagct
gtccttgacaaagatactcaaatgaaaccacctagcggagactccagctctgaggatgag
gaattggatatatccccagtcgacattgatgatgccttggtgattgaagaggatgacatt
tctgatgatgaagatgatgataatgaagatgttttggatgacagtcttcccatgtgcacg
gctgataaagtgcatgatgtgaaattggcggactcagtggatgatgatggtctggcaacc
agcggccgactaatgaatccagcttcaggaggcactagtggaacagcagcagcagcagca
aggggttctgattctactgatgctggcattgggaatacttatggttcgaggggtgcacta
tcctttgctgctgcggcgatggctgggcttggagctgccagtggtagaggtatcagggga
agtagggacttgcatggacgtaccctgtatcggagttcagatgagccctctaagttgata
tttactgcgggaggaaagcaacttagtaggcatttgacgatttatcaggctgtacaacga
caacttatgcttgatgaagatgatgatgacaggtttggtggcagtgatctcatctcaagt
gatggaagcagatttaatgacatttacaccatcatgtaccagaggccagacagccaagtg
aataggttgtctgttggtggagcaagttctaccacaccgtcaaaatccacaaagtctgct
actaccaactctagtgtagaatctcagtcacataaggcatctcttttggatagtatattg
caaggggagcttccatgcgaccttgagaaatcagattctacatataatgttctggcgctg
ttgcgtgtattagagggtttaaatcagctttgccctcgtctaagagcccaaactgtttct
gatcgtttcgcagagggtaaaattgcaagtctagatgatctgagtacaactgctgctaag
gttcctcatgaagaattcgttaatagcaaacttacacccaaattagctcgacaaatccag
gatgcgcttgctttgtgcagtggaagccttccctcttggtgctaccagttgactagagca
tgcccatttttgtttccgtttcagacccgtagacagtatttctactcaactgcttttggg
ttgtctcgtgcattaaatcgtttacagcagcagcaaggtgctgacggcagtgggtctaca
aatgaacgagagatgagaatagggagactgcagcgccagaaagttcgagtatcccgaaat
aggatattagattctgctgcaaaagttatggagatgtattctagccagaaagctgtgctc
gaagtagaatattttggtgaagttggtactggtctaggccctacacttgagttttacaca
cttctaagccatgatctgcaaaaggttgcccttgggatgtggagatcaaattctggtgac
aaggtatctatgcaaattgatagagatgagattgaagacggaaagtcatatgcagttagg
gacagagagatagttcaggccccacttgggctgtttcctcggccttggccctcaacagct
gacgtatctgaaggtggtcagtttcataaagtcattgaatatttccgccttttagggcgt
gtgatggccaaagcacttcaagatggacggctgttggacgtcccactgagtacagcgttt
tataagcttattcttggtcaagagctcgatttgcatgatattgtattatttgacgctgaa
cttggtaagaccttgcaagagctgcgtgttcttgttgcccgcaagcactatctggaggca
gtaggtggtgacaatggcagcacagtttctgatttatgtttacgtggatcccgcatagaa
gatctctgcttggacttcacactacctggctatcctgagtacattctgagaccaggagat
gaaattgttgatattaccaatcttgaggagtatatttcccttgtcgttgatgctactgtc
aagagaggagttgctcggcagatcgacgcgttcagatctggattcaatcaggtgtttgac
ataacatctctacaaatattcaccccttctgagctggactacttgttgtgtggtcgtgga
gagttgtgggaggcggagactcttactgaacatatcaaatttgatcacgggtatactgcc
aaaagtccggcgatcattaacttactagagatcatgggagaactaacagcagatcagcag
agggctttctgccaatttgtaactggagctcctaggcttcctcctggtggcttagctgtt
ctgaacccaaagctcacgattgtcagaaagcactcatcgacctcaagtgcagcagtcaac
ggagcaggggcttcggagacagcagatgatgatttgcccagtgtcatgacttgcgcaaac
taccttaagcttcctccttattctacaaaggaaatcatgtacaagaaactgctctacgcc
atcaatgaagggcaaggatcgtttgacctctcataa
DBGET
integrated database retrieval system
