Camelina sativa (false flax): 104729180
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Entry
104729180 CDS
T05044
Name
(RefSeq) uncharacterized protein LOC104729180 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
csat
Camelina sativa (false flax)
Pathway
csat03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104729180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104729180
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
104729180
SSDB
Ortholog
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GFIT
Other DBs
NCBI-GeneID:
104729180
NCBI-ProteinID:
XP_010446392
UniProt:
A0ABM0UU34
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Position
12
Genome browser
AA seq
1959 aa
AA seq
DB search
MANPKSVDPSLWWDPFDSLLTDLENASLSDDLPQPIAKKLEENHAWFVGSVSMFKSPSEK
SKEALNSQVVKIKEHQLVIKPELKDKALRISSHLNLDEIQSYILVERSMDQEYGTSDSVA
QDFIDVILLQYYMERQCLLKCTKRILIHSLYAAREESAISEEAVKLISDGLERRQSSVLE
DLLSSCFPQNMDVNLFTLWAEETLIEDNLILDILFLLYHESFCTCNGERWRKLSSFYKGI
LSGSYNFRKLAVSAEAQHSACRVQILLLMILIDTLDMENLLQMVHDGVPFRSGTCVFSIV
DVQEMDATISSLNTFEVKEAGPLVLAWAVFLCLVSSLPGKEEIPFLMDIDHVSYVQQAIE
AASLSYFLEILQSNVLNDFDGPVSGYRSVLRTFISAFIASYEINFQLDDAILELILDILC
KVYHGEESLCNQFWDRKSFVDGPIRCLLFDLEIEFPFRSAELIRLLSSLSEGRWPAECVY
NFLDKSVGVSTLFDITSDSPTDDACQLVETSRPVHIPGLEGLVIPSNTRGRILRINSENT
GLVRWEYSLSGIIVLIIRLANGLYIGNNREAFVTLELLRRMVTFNKAVCFSLLNISHFFY
VHESYVNGEMESDVRVVDIICNSVRSLTYDSGGAAVMAMAVDILAKLLRCSPSDVAPMVL
KANIFDITSGSDVPDSGYNISLSGTWSLSGKLAKMILIDCEKNDTSCPLVISVLEFTMQL
VEGGLENDVVFGLVVFSLQYILASHEYWKYNHGNMRWKVTLKVIEVMRTCLRFSKLSTKL
RDVLLDILLHDASVHSALFRIICTTTQTLENLCSSRFVEPAEIEGWQLAIVSVLDVLNVT
LSQFSESTHSALPVFHQAMLSSTTKPISVVAAVTSLISYFRNPTIQVSAARVLSKLFALA
ESSQLVSNAGFGLDNKQITDLRNPITEIVLDLSGQNEDLVVATLKLLTVAARYQPALLVA
IFDSNEDSDAGNLNQSGKDASSIPDRACKSRLLHTILQYVERATDFVDRYTNILLGLLDF
LKTLWQEAGQYAGMLEQFKASKKLWQQLSNIISQASKLKDSMVGSLGNKEISKLFVKYQC
QSSVLEIMACNMFLYKKLLFAESLKKPCVELKEKKNTAVSPPKITWTADSDPKDIFSKWC
DESVLDGLIQSVSSLDAESEINFQAKVAAVLLIVHLIVKLEASGAGALSMVLVGKIKLIS
EVLCAQPAFSELLAQYSKLGYSGGKELMPMIFSDLYCHLQGKLEGRDIPTGPFKELFQFL
LESSFWEIYKQKTNEDVNMALGDCLFDTEQIRAELGIDIWDFSEWKTSKTTAEEMLSYMQ
RANSMVLLSTSQLSVLHALISVLILYEDNSLEETAAVERKIPSRVTLSSIDGVSQKFYTT
VDSLASLWDAPKIVFDILTAQADLLSRLLKSAKKNLSLSICALVLRNVGPGLKILGSLRH
SNAILKKTINLLLEVLLLVVGFGSENSNSSGMGHMVPAKDFAEISDATIGLLPLLCNFMG
NPEYLALCLTAVDLILRNFLTPETWFPIIQNQLRLQHVILQLQDKKSTASVSAILKFFLT
IAQVHGGAQMLLNSGFFSTLRALFVEYPDGMSTLVSDNEKGSLLEKTEKPQHIWGIGLAV
VTAMVHSLGSGSAGADIVESVISYFFLEKGYMISYYLAAPDFPSDDRDKVRPRSGRTWTS
LAYLRETEHTLLLMCALASHWRLWVKIMNGMDSPLREMTIHLLAFISKGSQRLRESQSQT
SHLLCPPVVKEEFDSCKRPSFINSKHGWFALAPIVCVGKPKITAVSISTALVIRGHTAEH
PASVTQSQFSDSVAIQIYRVASVLLKFLCLQAEGAVKRAEEVGYVDLAHFPELPEPEILH
GLQDQATAIVAELCDNYRSKEVPDEVKKLCLLLIQTTEMSLYLELCVVQVCRIHPVFGRV
DNFSKDLKKLVKAAEVHAYLELSMDSLKKIAVFLYPGSL
NT seq
5880 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccctaaatccgtcgatccgtctctctggtgggatccgttcgactctcttctc
accgacctcgagaatgcttctctctctgatgaccttcctcaacccatcgcgaagaagttg
gaggaaaaccacgcgtggttcgtcggaagtgtgtcgatgttcaagtcaccgagtgagaaa
tcaaaagaagctttgaattcgcaagtggtcaagattaaggagcaccagttggtgattaag
cccgaattgaaagacaaagcacttcgaattagctctcatctgaatctagatgaaatccaa
tcttatatcctcgtggaaagatctatggatcaggaatatggaacctctgactccgttgct
caagatttcattgacgtgatactgcttcagtattacatggagcgccagtgcctactaaag
tgtacaaagcgtattctcatacattccttatatgcggcaagagaggaaagtgcaatcagc
gaggaagctgtaaagctgatctcagatgggcttgaaagacgacaatcttcagttcttgag
gaccttttgtcctcttgttttccacagaatatggatgtcaatctattcactttgtgggcg
gaggagacactaattgaggacaatttgattttggatattctcttccttctttaccatgaa
tcattttgcacttgtaatggggaaagatggagaaaactgtcttcgttctataaggggatt
ctttcaggttcatataattttagaaagctggctgtgtcagctgaagcacaacattctgca
tgtcgtgtgcaaattctgttgctgatgattcttatagacacattggatatggagaatctg
ttacaaatggttcacgacggagtacctttcaggtctggaacttgtgtcttttccattgtt
gatgtccaagagatggatgcaacaatctcaagcctcaacacttttgaagtaaaagaagca
ggacccctcgtcctggcatgggcagtctttctgtgtcttgtatcatctcttcctgggaag
gaggaaattcctttcctgatggatattgatcacgtgagctatgttcaacaagctatcgag
gcagcatccttgagttatttccttgaaatccttcaaagtaatgtgctgaatgatttcgat
ggaccagtctctggttatcgtagtgtcttgaggacttttatttcagcatttattgcgtct
tatgagatcaattttcagctggacgatgccatcctcgagttgatactagacatcctctgc
aaggtttatcatggagaggagtcactctgtaatcagttttgggatcgaaagagttttgtt
gatggccctatccggtgtctcctctttgatctggagattgaattcccattcagaagtgct
gaactcattcgtctcttgtcgtccctgagtgaaggcagatggcctgctgaatgtgtatac
aactttctggataaatcagtcggggtctcaactttatttgatattactagtgactctccg
acggatgatgcttgccaacttgttgaaacttcccgaccggtgcatattccaggtcttgaa
ggtttagttattcccagcaatactcgtgggcgaattctgagaataaacagtgaaaatact
ggccttgtacggtgggagtattcgctatccggcataattgtgttgatcatccgtttggcc
aatggactctacattggtaacaatcgtgaagcttttgtgactctagagctgcttcgtcga
atggtgacatttaacaaggctgtatgtttctccttactgaatatcagccacttcttttat
gttcacgaatcttatgtaaatggggagatggaaagtgatgtgagggtggttgatataatt
tgcaattcagtcagaagcctgacttatgactctggtggtgcagctgtgatggcaatggct
gttgatatcttagctaaacttctgcgatgttccccgtcagatgttgctcccatggtctta
aaggcaaatatatttgatataacttcaggttcagacgtccctgacagtggctacaatatt
tcattgagcggaacatggtcgctctctgggaaacttgcaaagatgatcttgattgactgc
gagaagaatgatacaagctgcccactggtcatatcagttctggaatttacaatgcaactt
gtggaggggggactagaaaatgatgtagtttttggtctagtcgttttctcgttacagtat
attcttgctagtcatgagtattggaaatacaatcatggaaatatgcgttggaaagtgaca
ctaaaggtcattgaggtgatgagaacatgtctcagattcagtaagttgtccacaaagctg
agggatgttctccttgatatattgctgcatgatgcctctgttcacagcgcactgttccgg
atcatttgtacgactacacaaactttagagaacctttgttcaagccgttttgttgaaccc
gcagagattgaaggatggcaacttgctatagtctccgttttggatgttttgaacgtcact
ctctcccaattttctgagagtacacattctgctctccctgtatttcatcaagccatgctg
tcctctacaacaaaaccgatctcagttgttgcagctgtcacatcactgatttcttatttc
cgtaatcctacgatacaggtttctgctgctagagtgctgtcaaagttatttgccttggca
gaatcatcacaactagtaagcaatgcaggctttggtctagacaataaacagattacagat
ttaagaaatccgattaccgagatcgtacttgatctgtcgggacaaaatgaagatctagtc
gtggcgaccttgaaactacttactgtggcggcaagatatcagcctgctcttttagtcgcc
atatttgattcaaacgaagactcagatgctggcaacttaaaccagtccggcaaagatgcc
tcctcaattcctgaccgggcttgtaaatctcgcttattgcacactatcctgcaatacgta
gagagagcaaccgattttgttgatagatacacaaatatattactgggtttacttgatttc
ctgaaaaccctttggcaagaggctggccaatacgcgggtatgctggaacagttcaaggca
tcaaaaaagttgtggcagcaactttccaacattatatcacaagcgtctaagctaaaagat
tcgatggttggaagtttaggcaataaagaaatttctaaattgtttgtgaaatatcagtgt
cagtcttctgttttggaaattatggcttgcaacatgtttttgtacaagaaattgctgttt
gcggagtcactgaaaaagccatgtgtggagctgaaagagaagaaaaatactgcagtatct
ccacccaaaataacttggacagctgattcagatcccaaggatatcttttcaaaatggtgt
gacgaatctgttttggatgggcttatccagtcagtttcttctttagatgctgaaagtgaa
ataaacttccaagcaaaggttgctgccgttttacttattgtacatttgattgtgaaactg
gaagcatctggcgctggagcattgtctatggttttagttgggaagatcaaactcatatca
gaagttctttgtgctcaaccggctttttctgagttgttggcgcaatattcaaaacttggt
tatagtggaggaaaggagttgatgcctatgattttcagcgatctatactgtcatctacaa
ggaaaacttgagggtcgtgacatcccaactggtccattcaaagagcttttccagtttcta
cttgagtctagcttttgggagatatataaacagaaaactaatgaggacgtaaatatggct
ttgggggactgtttgtttgacactgagcaaataagggctgaattaggcattgatatatgg
gatttctctgagtggaagacatctaaaacaacagcagaggaaatgttgagttacatgcag
agagcaaactcgatggttttactctcaacttcgcagctctctgttttgcatgcattgatt
tccgtcttgatactttacgaggataattcccttgaagaaactgcagctgttgaaaggaaa
atcccttctcgagtcactctttcaagcattgatggagtatctcaaaaattctacaccaca
gttgattcacttgcctctctctgggatgcacccaagattgtgtttgatattcttacagca
caggcagacttgctatcccgcctcttgaaatccgcaaaaaaaaatctgtcattatctata
tgtgcacttgtcctgagaaatgttgggcctggcctcaaaatccttggtagtttgaggcat
tcaaatgctatattgaagaagacgataaacctcctgcttgaggtgctgctcctggttgtg
ggttttggttcagaaaactcaaactcgagtgggatgggacatatggtgccagcaaaagat
tttgcagaaatatctgatgctacaattggattattaccccttctctgcaacttcatgggg
aatcccgagtacttggctctctgcctgaccgcagtagacctgattctcagaaattttttg
acgccggagacatggttccctattatacagaatcaactccgactgcagcatgttattcta
caactgcaggacaagaaatcaacggcatctgtttcagcaatactgaaatttttcttaact
atcgctcaagttcacggcggagctcagatgcttctaaattctggatttttctcgacttta
agagctttgtttgtggagtatccggatggaatgtctactttggtatctgacaatgaaaag
ggctcgctgctagaaaagacagaaaaacctcagcatatctggggaatcggtttggctgtg
gttactgccatggttcattctctaggatctggttctgcaggggctgatattgtggagagt
gtcatatcttactttttcttagagaaaggttacatgatctcgtactatctcgccgcacca
gatttcccgtctgatgatcgtgacaaagtgagaccacgaagtggacggacgtggacttcc
cttgcttatctgagagaaaccgagcatactctccttctgatgtgtgctttagctagccat
tggagattatgggttaaaattatgaacgggatggattctccattgagagaaatgactata
catctcctggcctttatcagcaaaggttctcaacgccttagagagtctcagagccaaaca
tctcatctgttatgccctccagttgtgaaagaagagtttgattcctgcaaaagaccgtcg
ttcatcaacagcaaacatggatggtttgccctagcacctatagtttgtgttgggaaaccc
aagatcactgctgtatcaatctcgactgctctagttatcaggggacacacagcagaacat
cctgcgtctgttactcaatcacagttttcagactcggtcgcaatacagatatatagagtg
gcctctgtcttgttgaaatttttgtgtttacaagcagagggtgctgttaaacgggcagaa
gaggtgggatatgtcgatcttgctcatttccctgagcttccagagccagagattttgcac
ggtctacaggaccaagccaccgcaatagttgctgagctttgtgataattacagatcgaaa
gaggttccagatgaagttaagaagttgtgccttttgctgatccaaacgacagagatgtcg
ttatacttggaactctgtgttgttcaagtttgcaggatccatcctgtttttggccgtgtg
gataacttctccaaagacttgaaaaagcttgtgaaagctgccgaagtgcatgcgtacttg
gaactgtccatggattcactgaagaaaatagctgtgtttctgtatcccggatcgctatag
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