Camelina sativa (false flax): 104731438
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Entry
104731438 CDS
T05044
Name
(RefSeq) DNA damage-binding protein 1b-like isoform X2
KO
K10610
DNA damage-binding protein 1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03420
Nucleotide excision repair
csat04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
104731438
09124 Replication and repair
03420 Nucleotide excision repair
104731438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csat04121
]
104731438
03400 DNA repair and recombination proteins [BR:
csat03400
]
104731438
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
104731438
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
104731438
TCR (transcription coupled repair) factors
Cul4-CSA complex
104731438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
104731438
NCBI-ProteinID:
XP_010449116
LinkDB
All DBs
Position
12:12474923..12487051
Genome browser
AA seq
1088 aa
AA seq
DB search
MSVWNYVVTAQKPTCITHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYG
RIATMELFRPHGEAQDFLFIATERYKFCVLQWDYESSELITRAMGDVSDRIGRPTDNGQI
GIIDPDCRVIGLHLYDGLFKVIPFNNKGQLNEAFNIRLEELQVLDIKFLYGCVKPTIAVL
YQDNKDARHLKTYEISLKDKEFFEGPWSQNNLDNGADLLIPVPSPLCGVLIIGEETIVYC
SANAFKAIPIRPSITKAYGRVDLDGSRYLLGDHAGLIHLLVITHEKEKVTGLKIELLGET
SIASSISYLDNAVVFVGSSYGDSQLIKLNLQPDAKGSYVEILEKYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVS
FISETRILAMNIEDELEETEIEGFLSEVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELR
NKWDAPAGFAVNVATANASQVLLATGGGHLVYLEIGDGTLTEVKHVLLEYEVSCLDINPI
GDNPNHSQLAAVGMWTDISVRIFVLPDLTLVTQEQLGGEIIPRSVLLCSFEGMSYLLCAL
GDGHLLNFQLDTSSGKLRDRKKVSLGTQPITLRTFSSKSATHVFAASDRPAVIYSNNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTIDAIQKLHIRTIPIGEHARRICH
QEQTRTFAICCLRNQPSAEESEMHFVRLLDAQSFEFLSTYPLDAFEYGCSILSCSFTDDK
NVYYCVGTAYVLPEENEPTKGRILVFIVEEGRLQLITEKETKGAVYSLNAFNGKLLAAIN
QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGA
IEERARDYNANWMSAVEILDDDIYLGADNCFNLFTVKKNNEGATDEERARMEVVGEYHIG
EFVNRFRHGSLVMRLPDSEIGQIQTVIFGTVSGMIGVLASLPQEQYACLEKLQTSLRKVI
KGVGGLSHEQWRSFNNEKRTAEAKNYLDGDLIESFLDLSRGKMEEISKSMDVQVEELCKR
VEELTRLH
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtatggaattacgtcgttacggctcaaaagccgacctgtatcactcactcttgc
gtcgggaacttcaccagtcctcaagaactcaatcttattgttgcgaaatccactcggatt
gagatccatctgcttagtccacaggggcttcagactatattggatgttcctctatatggt
aggatcgcaactatggaattgttccgtccccatggtgaagcacaagattttttgttcatt
gcaactgagagatataaattctgtgtacttcaatgggattatgagtcatctgagcttatt
acaagggcaatgggggatgtttctgaccggataggccgaccgaccgacaatggtcagatt
ggtataattgatcctgattgcagagtaattggtctccatctgtatgacggcttgttcaag
gttattccgtttaacaataaaggacagctcaatgaagcttttaacataaggctggaggag
ttgcaggtcctagatatcaagtttttgtatggatgcgtgaagccaacaattgcagtactt
tatcaggacaacaaagatgctcgtcatctcaaaacatatgaaatttctcttaaagataag
gaattttttgaagggccatggtcacagaacaatctcgacaatggtgctgacttattaatc
cctgtaccttctcctctgtgtggcgtccttatcattggagaagaaaccattgtctattgt
agtgccaatgcattcaaagcaataccaatacgaccttccatcacaaaagcatatggaaga
gttgatcttgatggttctaggtatcttcttggtgaccatgctggactgattcacctgctt
gttataacccacgagaaagaaaaggtcactggcctcaaaattgagcttttgggtgaaaca
tctatagcatcttccatctcgtatcttgacaatgctgttgtctttgtcggttcaagttat
ggagattcacagcttattaagctaaacttgcaaccggatgcaaaaggttcatatgttgaa
attttagaaaagtatgtcaacttggggcctattgtcgacttttgtgtagttgatcttgag
agacaagggcaaggtcaggttgtaacatgctctggagcatataaggatggttctcttcgc
atagtccgcaatgggataggaataaatgaacaggcgtccgtggaacttcaaggcatcaaa
ggaatgtggtcgttgaaatcgtcaattgatgaagcatttgatacatttcttgtagttagt
tttatcagcgaaactcgaatattagccatgaatatagaggatgaactggaagaaacagag
attgagggtttcttgtctgaagtgcagactttattttgccatgatgctgtctacaaccaa
cttgtacaggttacctcaaattctgtcagattagtcagttctacaactagagaattgcga
aataaatgggatgccccagctggattcgctgttaatgttgcaactgcaaatgcgagccag
gttcttttggccactggaggtgggcatttggtctacctagaaattggagacgggacattg
acggaagtcaaacatgtcctgttggagtacgaggtttcttgtcttgacataaacccgatt
ggcgataatcctaatcacagtcagctagctgcagtcgggatgtggacagatataagtgtg
aggatttttgtgctgccagacttgactcttgttactcaggagcaactaggaggagagata
attccccgatctgttcttctttgttcatttgaagggatgtcttacttgctctgtgctctt
ggagatggtcatctcttaaattttcagttggatacgagtagcgggaaattaagggatcga
aaaaaagtatcactggggactcagcctataactttgcgtactttttcatctaaaagtgca
acacatgtgtttgctgcatcagatagaccagcggttatatatagcaacaacaagaagctg
ttatacagcaacgtgaatctaaaagaagttagtcatatgtgtcccttcaactctgctgct
tttccagacagtctagcaattgccagggaaggcgaacttacaattggcaccatcgatgcc
attcagaagcttcacatacgcactattcccattggagagcatgctcgtcgtatctgccat
caggaacaaacacgaacatttgctatctgctgtttgagaaaccaaccaagtgcggaagaa
tctgaaatgcattttgtccgtctgctggatgcccagagttttgagttcttgtcaacttac
ccattggatgcctttgaatacggttgctccatattgagctgctcgtttacagacgacaaa
aatgtctattattgtgttggtacggcatatgttttgcctgaggaaaatgaaccaactaag
ggaaggatacttgtctttatagttgaagaaggaagattgcagcttatcacagagaaggaa
accaagggagctgtttattctctcaatgccttcaatggaaaacttcttgctgctattaat
caaaaaattcagttgtataagtggatgctgcgggatgatggcactcgcgagctgcagtct
gaatgtggacatcacggtcacatactagctctctacgtgcagacccgtggagacttcatc
gttgttggtgacctcatgaaatcaatctctttattaatttacaagcacgaggaaggtgca
atcgaggaaagagctcgtgattataatgcaaactggatgtcggcagttgagatactcgat
gatgatatctaccttggtgctgataattgcttcaacctattcacagtaaagaagaacaat
gaaggtgctacggatgaagaaagggctcgtatggaggtggtaggtgagtatcacattggg
gaatttgtgaaccgattccgccatgggtcgcttgttatgaggctgcctgattcagagatt
ggtcagatacagactgtcatatttggcacagtgagtggaatgatcggagtgctagcttct
ctgcctcaagaacagtatgcgtgtctagagaaactgcagacaagtctgaggaaagtgatt
aaaggagttggtggtctaagccacgagcaatggagatcattcaacaacgagaaaagaact
gcggaagcgaaaaattacttggatggagatctcattgaatccttcttggatctgagcagg
ggtaagatggaggagatctctaaaagtatggatgttcaagtggaagagttgtgcaagaga
gttgaggagcttactaggcttcactga
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