Camelina sativa (false flax): 104731653
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Entry
104731653 CDS
T05044
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E-like isoform X1
KO
K07466
replication factor A1
Organism
csat
Camelina sativa (false flax)
Pathway
csat03030
DNA replication
csat03420
Nucleotide excision repair
csat03430
Mismatch repair
csat03440
Homologous recombination
csat03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
104731653
03420 Nucleotide excision repair
104731653
03430 Mismatch repair
104731653
03440 Homologous recombination
104731653
03460 Fanconi anemia pathway
104731653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csat03000
]
104731653
03032 DNA replication proteins [BR:
csat03032
]
104731653
03400 DNA repair and recombination proteins [BR:
csat03400
]
104731653
Transcription factors [BR:
csat03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
104731653
DNA replication proteins [BR:
csat03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
104731653
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
104731653
MMR (mismatch excision repair)
104731653
DSBR (double strand breaks repair)
HR (homologous recombination)
104731653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
zf-CCHC
RADX
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
104731653
NCBI-ProteinID:
XP_010449392
LinkDB
All DBs
Position
12:13910340..13914377
Genome browser
AA seq
798 aa
AA seq
DB search
MEVSLTAGAIGKIMSGEVTSENDMMPVLQVTDLKHVKAHQNPTSERFRMVLSDGTHLHQG
MLGADLNNLVKDGSLQSGSIIRLTHFVGSIVQQRRIVIVMVLEVIKVKFDIIGNPVPIKP
SDQRGTDSGIKLNTTGSEQQGRGESSGVRQVINTETGRSNAAISPQVVQRQVFGTGSSVP
ASTPSSTRAYSNPSAGHGAPRQDYARDPPTTYPRQPTYQPQPPPPMYANRGPVARNEAPP
RIIPINGLSPYSGRWTIKARVTNKAELREYSNPRGQGKVFSFDLLDADGGEIRVTCFNAV
ADQFYDQIVVGNLYLVSRGSLRPAQKNFNHLPNDYEITLDNASTIQQCYEEDAGIIPHHQ
FHFRTVGDIESMETNSIIDVIGIVSSISTTVAIMKKNGTETQKRSLQLKDMSGRSVEVTM
WGNFCNAEGQRLQSICDSGGFPVLAVKAGRISEFNGKAVSTIGSSKLFIDPDFVEALKLK
DWFEREGKSVPCISISREFSGSARVDVRKTISQIKDEKLGTSEKPDWITVSATIIYMKFD
NFCYTACPIMNGDRLCSKKVTSNGDGTWRCEKCDKNVDECDYRYILQLQIQDHTDITWVT
AFQEAGEEIMGMSAKDLYHVKYVNEEEEKFESIIRKVAFTKYILKLKVKEETYGDEQRVK
ATVVKVDKLNYSSDTKTILDAMDKLRNRDASSLPIKREGSHHTVEVVNTSIGSAGTRDPS
SVERRDFGLHAHQSRQHGNQYSNGGSGPHGGGATSCNVCGNSGHVSANCPSVNEPQGQYR
GTSGSYGGGLPRQHVGSY
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaagtttgacggcgggagcaatcgggaagataatgagtggagaagtgacgagt
gagaatgacatgatgccggtgctacaagtgacggatttgaagcatgttaaggctcatcaa
aatccaacgagtgagaggtttaggatggttttatcagatgggacgcacttgcatcaagga
atgctcggagctgatctgaacaatcttgttaaagatggttctcttcaatccggttcgatt
attagacttactcatttcgtcggtagtatcgtccagcagcgaaggattgttattgttatg
gtacttgaggtgataaaagtgaagtttgatataattgggaatcctgttccaataaagcct
agtgatcaacgtggaaccgattctggtattaagttgaatacaactggttctgagcaacaa
ggtaggggtgagtctagtggtgtccgtcaagtaatcaataccgagactgggagaagtaat
gcagctatttcacctcaagttgttcaaaggcaagtgtttggtactggttctagtgttcct
gcatcaacaccttcttccactcgagcatacagcaatccgtctgcaggtcatggagcccct
aggcaggactatgcgcgtgatcctccaaccacttatcctcgtcagcctacttatcagcct
caaccaccaccgccaatgtatgcaaacaggggaccagtggcaaggaacgaagcacctcct
aggataattccaattaatggtcttagcccgtactcaggtaggtggaccatcaaggccaga
gtcacgaataaagcagaacttagggaatacagtaatccccgtgggcaagggaaagtgttc
agctttgatcttcttgatgctgatggcggagagatacgtgttacttgttttaacgctgtg
gctgatcagttctatgaccagattgttgttggtaatctttatctggtttctaggggcagt
ttgcggcctgcccagaagaactttaatcatcttcccaatgattacgagatcacgctggat
aatgcatcaactatacaacaatgttatgaggaggatgctggaatcattccacaccatcaa
ttccatttccgtaccgtaggtgatattgaaagcatggagaccaacagcatcattgatgta
attggtattgtgtcatctatcagtactactgttgcaataatgaagaaaaacggaactgaa
acacagaagagatcacttcagttaaaggatatgtctggtcgaagtgtggaggtaactatg
tggggtaacttctgcaatgccgaaggacaaaggctgcaaagtatttgtgattctggtggc
tttccggttcttgctgttaaggcgggcaggatcagtgagtttaacggaaaggcagtgagc
accattggatcaagtaaactgttcattgaccctgattttgttgaagccctgaaactgaag
gactggtttgagagagaaggaaagagtgtcccttgtatctccatatctcgggagttttcc
gggagtgccagagtagatgttcgcaaaacaatatcacaaattaaggatgagaaactaggg
acctcagaaaaaccagactggatcacagtcagtgccactattatatacatgaagtttgac
aacttctgctacacagcttgtcctatcatgaacggtgatcgtctatgcagcaaaaaggtc
acaagcaatggagatggcacatggaggtgtgaaaagtgtgataaaaatgttgatgaatgt
gactacaggtatatactgcagctccagatacaggaccatacggatattacttgggtcacg
gcatttcaggaggctggtgaagagataatgggcatgtctgctaaagatttgtatcatgtg
aagtatgtaaatgaggaggaggaaaaatttgaaagtatcatccgtaaggttgcttttacc
aagtacatcttgaagctgaaggtaaaagaagaaacatatggcgacgaacagcgtgtgaaa
gcaacagttgtgaaagtggacaagctaaactattcatcagataccaagactattttagat
gccatggataaactcaggaacagagatgcaagttctcttcccataaagcgagaaggatcc
catcacaccgttgaggtggttaacactagtataggaagtgcaggaaccagagatccctca
tcagtcgaaagaagggatttcggtttacacgcacatcaatcgcgtcaacatgggaatcag
tatagtaatggcggctctgggcctcatggtggtggtgctactagctgcaatgtctgtgga
aacagtggtcatgtttctgcaaactgtccaagcgttaacgaaccacaagggcagtacaga
gggacgtctgggagttatggaggaggactacctaggcaacatgttggaagctactga
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