Camelina sativa (false flax): 104732525
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Entry
104732525 CDS
T05044
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104732525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104732525
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104732525
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_14
TPR_19
TPR_10
TPR_8
HEAT_Nup120
TPR_11
ARM_TT21
Coatomer_E
SRP_TPR_like
Motif
Other DBs
NCBI-GeneID:
104732525
NCBI-ProteinID:
XP_010450378
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Position
12:23859885..23863811
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AA seq
776 aa
AA seq
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MDSRDSSSAVASDAARDASLLSEDAAVLSVTSTLAKSALSCFQSGKFEDCIDILIQLDQK
QHNDPKVLHNMAIAEYFKGGCSKSKKLLEELNCVKKQSEELASAAREQVEAVNPGTNVSV
SKDQFDSTVTTLNIAVTWFHMHQYTKSSSILEPLFQNIGRLDETIALQISFLLLDIALAC
HDAVKFLAVFDYMDKAFGVGFGSHEENGSTMQLSSNQGSKTSSLLSSSVVADTVAESSLC
EETLDYDNVLAEIAAEKRMKSVGHIPANNLLKTLSERSFSTADLKLELQLYKVRFLLLTR
NLKLAKREVKHAMNIAQKRDSSMALLLKSQLEYAHGNHQKAMKLLVVSGIHKESGTSGIF
NNNLGCIYYQLGKYEASSQLFSKALRSCSSLRNEKPVKTFSLSQNKSLLITYNMGLLYLA
RGEPLLAAQCFQKASVVFCRQPLIWLRLAECCMMALQNGLLDRSEIRVNVVGKGKYRKLM
IEENGHLELDGSTQCGKLSLPLARACLSNGIYLLNESLLNESKSDRESTLSVGMNETKEA
SSADHGEANTNSDLKEAKGGLNQDIMQSSLSAFKDIQSREKLLIKQALLANMAYVELELE
NPIKALAAANSLLQLPDCSKIYVFLGHLYAAEALCLLNRPVEAGAHLSAYLVGPDDFKLP
YEQEDFDQWRMNTSSDCEETLDSSTGNARDSVFLKPEEARGALFADLAALLATQGHHDQA
KAMITHALTLLPNNVQATVTAVYIDMMLGRSQDALTRLKQCTRVSFVPGRLEVRAS
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggattctcgagattcgtcgtccgctgtagcatccgacgccgctagagatgcgtcgtta
ctctccgaagacgcagccgttctctctgtaacctctacactcgctaagtccgctctttct
tgcttccaatctggaaaattcgaagactgtatcgacattttgattcagctcgatcagaag
cagcataacgatcctaaggttctacacaatatggcaattgcagagtacttcaagggtggt
tgctcgaaatccaagaaactgttggaagagcttaactgtgtcaagaaacaaagtgaagaa
cttgcttctgcagcaagagaacaagtagaagctgtaaaccctggaactaatgtctctgtg
tcgaaggatcaatttgatagtacagtaacaacgctcaacattgcagttacctggtttcat
atgcatcagtatacaaaatcttcatccattctagaacctttgttccaaaatattgggcgg
ctagatgagacaatcgcacttcaaatctcttttttgttgctggatattgcactggcttgt
catgatgctgtaaaatttttggctgtgtttgactatatggacaaagcttttggtgttggt
tttggaagccacgaagaaaatggaagcacaatgcaactttcgtcaaatcagggatcaaag
acatcttctctcctgagcagctcggtggtggcagatacagttgctgaaagtagtttgtgt
gaggaaactctagattatgacaatgtgctagcagaaattgcggcagagaaacgaatgaag
tcagttggtcatataccggcaaacaatcttctcaagacattaagcgaaaggtcattctcc
actgctgatctgaagctcgagttgcagctttacaaggtccggtttttgcttcttaccaga
aacttgaaactggcgaagcgtgaagttaaacatgcgatgaacattgctcaaaaaagggac
tcttctatggctctcctcttgaaatcccagcttgagtatgctcatgggaatcatcaaaag
gctatgaagcttttggtggtctctggtattcacaaagaatcagggacttcaggaatcttc
aacaacaaccttggttgcatatactatcagcttggaaaatatgaagcttcctctcagtta
ttttcaaaagctctaaggagctgttcatcacttagaaatgagaaaccagtgaagacgttt
tctctctcacagaataagtctttgttaatcacatacaacatgggtttgctttatttggcg
cgtggggagcctctacttgctgctcaatgcttccagaaggctagtgttgttttctgcaga
caacccctcatttggctccgtttagctgaatgctgtatgatggctttacaaaacgggctt
ttggatagatcagaaatcagagtcaatgtagttgggaaagggaagtacagaaaacttatg
attgaagaaaatggacatctggaacttgatggtagtacccaatgcgggaagctttcatta
ccactagcacgggcttgtctctcaaatggtatatatctgctcaatgagtctctcttgaat
gaatctaaatcagatcgtgaatcgacattatccgtggggatgaacgagaccaaagaagca
tcatccgctgatcatggggaagctaacacgaactcagacttgaaagaggcaaaaggagga
ttgaaccaggacataatgcaaagctccctctctgctttcaaggatattcaaagtagagaa
aagctgttgattaaacaagctctgcttgccaatatggcatacgtagaactggagttggag
aatcctatcaaagccttggcagctgctaattcactcttgcaacttcctgattgttcaaag
atctatgttttcttaggccatctttatgcagcggaggccctctgcttgctcaaccgtccc
gttgaagctggcgcgcatttatctgcgtatctagttggaccggatgattttaaattgcca
tatgagcaagaagactttgaccagtggcggatgaacacaagttctgattgtgaagagacg
ttggattcgtcaacgggaaatgcccgggattctgttttcctaaagccagaagaagctcgt
ggagcactttttgcagaccttgcggcgctgcttgccacacaaggacatcatgaccaggcc
aaagctatgataacacacgcattaactctcttaccaaacaatgtacaagctacagttaca
gcagtctacattgacatgatgttgggtaggtcgcaagacgcccttactcggttaaaacag
tgtacccgtgtgagctttgttccaggcagattggaagtgagagcctcgtag
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