Camelina sativa (false flax): 104734139
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Entry
104734139 CDS
T05044
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
csat
Camelina sativa (false flax)
Pathway
csat03440
Homologous recombination
csat03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104734139
03460 Fanconi anemia pathway
104734139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csat04121
]
104734139
03036 Chromosome and associated proteins [BR:
csat03036
]
104734139
03400 DNA repair and recombination proteins [BR:
csat03400
]
104734139
Ubiquitin system [BR:
csat04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
104734139
Chromosome and associated proteins [BR:
csat03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
104734139
DNA repair and recombination proteins [BR:
csat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
104734139
FA (Fanconi anemia) pathway
Downstream FA components
104734139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Caskin-tail
Motif
Other DBs
NCBI-GeneID:
104734139
NCBI-ProteinID:
XP_010451954
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Position
13:134771..141084
Genome browser
AA seq
1140 aa
AA seq
DB search
MSTWQLFPDSSGDGFRWEVAGRILQSDSDDSTPTQALDFTTPLPSMPDLLLQGCSKLIER
EESMPTPGEIPMFRTGLGKSVPLKESSIARAKSLLAVGNVASYSDLQNTYSSNSQMRAVD
TPGTLPMFTTALGKSVPLKESSMAKALSILGGDKMNDSANVLPMESGFGVPNSFFQTASN
KKVNVSSAGLARAKALLGLEEDDLNEFTHVNQSPSSHRQHEWSGLKTHEEFDALAVQHPS
RTPGKFEDHVSGKMSEFLNPSLKVAPTKFQTADGKSLSVSAEALNRARNLLGDPELGTLF
DDVAAGDQFVTPQKDEKLGDIAINSGSANTVYTAHEEKTSNKHTSNSFVSPLRSSSKQFR
SVKLENLPLGGNLIKKFDAAVDEADCALNITKLATHGLSNNRPLSSDMAVNNSKENGFNP
RAKQFGRPADQPLVDITNRAIAYANIKQESTQKKRLGKTVSVSPFKRPRISSFKTPLKKT
DLHASSGLSVVSSDTLSSKKVLSTRYPERSPRVYIKDYFGMHPTATTKMDYVPDHVRRIK
SSNADKYVFRDESSSNMVGAETFLQMLAESGASLQHASRKWVTNHYRWIVWKLACYEIYY
PAKCRGNFLTVTNVLEELKYRYEREVNHGHCSAIKRILSGDAPASSMMVLCISAINPKTN
NDSQETPGSDSCSNVKVELTDGWYSMNAALDVVLTKQLNAGKLFVGQKIRILGAGLSGWA
TPTSPLEAVISSTICLLLNINGTYRAHWADRLGFCKEVGVPLAFNCIKCNGGPVPKTLAG
ITRIYPILYKEKLAEKKSIVRSERMESKIIQLHNQRRSALVEGLMCEYQRGVNGFNSQND
TGSEEGAKVFKLLETAAEPELLMAEMSPEQLTSFTTYKAKYEAAKQMKMEKSVANALEDA
GLGERNVTPFMRIRLVGLTSLSYEGEHNPKEGIVTIWNPTEKQRTELTEGKIYIMKGLVP
MNSDSETLYLHARGSSSRWQPLSPKASESFQPFFNPRKPISLSNLDAYTDVQQKKQWLFV
TDGSTQHSGEISNSLLAISFSTPAMDDISVPHISQNLVGSVVGFCNLIKRAKDARNEMWV
GEATENSVYFINAEAAYSSHLRTSSAHIQKWAKLSSSNSVIHELRQRVLFIIGACKSPSC
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtggcagttatttcccgattccagcggcgatggtttccggtgggaagtcgct
ggccggattcttcagtccgactctgatgattcgactccaactcaggcgctcgacttcaca
actcccctaccttccatgcccgatctcttgcttcaaggatgctcgaagcttatagaacgg
gaagaatcaatgcccacgcctggcgaaatcccaatgttcaggactgggctggggaagtct
gtacctctaaaagagtcttcgattgctagagccaaatcccttttagctgttggaaatgtt
gcctcctattcagatttgcagaacacttatagctcaaactcccaaatgcgagcagttgat
acacctggaactttgcctatgttcacaacggctttaggcaaatccgtcccactgaaagag
tcttcaatggccaaagctttgtctattcttggcggtgataagatgaatgactcagccaac
gttcttcccatggagagtgggtttggtgttcccaactcatttttccagacagcttctaac
aagaaggttaatgtatcttctgccggtttggcaagagccaaggcattgctaggactagaa
gaagatgatttgaatgaatttacgcacgtgaaccagtcgccttcttcccaccgccaacat
gagtggtctggattaaaaacgcacgaggagtttgatgctttagcggttcagcatccttca
agaactccaggaaaatttgaggatcatgtttcagggaagatgtctgaattcctaaatcca
tctttaaaggttgctccaacaaagtttcagactgctgatggaaaatcattgtcagtgtcc
gctgaggcattgaatcgtgccagaaatcttcttggagaccctgaattagggactttattt
gatgatgtcgcggcaggtgatcaatttgttacaccacagaaagatgaaaagttaggtgat
attgctataaacagtggaagcgccaatacagtctatactgctcatgaagaaaaaacaagc
aacaaacatacgtcaaacagttttgtatctcctcttcggtcatcttcaaagcagtttaga
tcagtgaaattggagaacctacctttagggggtaatttgatcaagaaatttgatgcggct
gttgatgaggcagactgtgctctgaatatcaccaaacttgctacacatggactatcaaat
aacaggcctttatcatcagatatggctgtgaacaattccaaggaaaacggtttcaatcca
agagctaagcagtttggaaggccagccgaccagccacttgtcgatataacaaatcgcgct
atagcttatgcaaacattaaacaagagagtacccaaaagaaaaggctgggaaagacagtc
tccgtttctccttttaaaaggccaaggatttcctcctttaaaactcctttaaagaaaact
gatctgcatgcttcaagtggtttgtctgtcgtatcttctgatacacttagttccaaaaag
gtactttcgacaagatatccagaaaggtctccaagagtatatattaaggattattttgga
atgcatccaacagctacgaccaagatggattatgtgccagaccatgtcagaaggatcaaa
tcaagtaatgcagataaatatgtattccgtgatgagtcttcctcaaacatggttggagct
gaaacttttcttcaaatgttggctgagtctggtgcttccttacaacatgcatcgagaaag
tgggtcactaatcactacaggtggatagtctggaagcttgcatgctacgagatatactac
ccagcaaaatgcagaggaaattttctgacagtcaccaatgttctggaggaactaaaatac
agatatgagagagaggtcaatcatggtcattgctctgcaatcaagaggatcctgagtggt
gatgctccagcttcttcaatgatggtgctctgcatatcagctatcaatccaaagaccaac
aatgattctcaggaaacacctggttctgatagttgcagcaatgtgaaagtagaactcact
gatgggtggtactcgatgaatgctgctctggatgtggtgctaacaaagcagctaaatgct
ggaaaattgtttgttgggcagaagattcgaatccttggggcaggactttctggctgggct
accccaacatcacctcttgaggcagtaatttcaagtacaatctgtttgttgttgaatatt
aatgggacatacagagctcactgggcagaccgactaggattctgtaaagaagttggtgtc
cctctggctttcaactgtatcaagtgcaatgggggtccagtgcctaaaacgctagctgga
atcacacgaatataccccatactatacaaggaaaaattagctgaaaagaagtcaatagtt
cgatcagagagaatggaaagtaaaattatccagctgcataatcagaggcgctcagctctt
gttgagggtcttatgtgtgagtaccagagaggagtcaatggatttaacagccagaacgac
actggcagcgaagaaggagccaaggtctttaagctgttagagacagctgctgaacctgaa
ctcctaatggcagaaatgagcccagagcagttgacatctttcactacatataaagcgaaa
tacgaggcagcaaagcaaatgaagatggaaaaatcagtagcaaatgctctggaagatgcg
ggcttaggtgaaagaaatgtcaccccattcatgaggattaggcttgttggactgacgagc
ttaagttatgaaggtgaacacaatccaaaagaaggcatagtaacaatctggaatcctaca
gagaaacagagaaccgagctgacagagggaaaaatatacataatgaaagggctagtacca
atgaactcagattcagaaacactttacttacatgccagagggtctagctcaagatggcaa
cctttgtctccaaaagcttctgaaagttttcagccctttttcaacccacgtaaaccaata
tctttgtcaaatcttgatgcatacacggatgttcaacaaaagaagcagtggttgtttgtg
acagatggatccacccaacattcaggggaaatctcaaacagccttcttgctataagcttc
agcaccccagccatggatgatatctcggttccccacatcagccaaaatttggttggatcc
gtggttggattctgcaatctaataaaaagagcaaaagatgcgagaaacgaaatgtgggtt
ggtgaggcaacagagaactcagtctacttcataaacgcagaagctgcatactcgtctcac
ctcagaactagcagtgcacatatccaaaaatgggctaagctctcttcttccaactctgtc
atccatgaacttcggcaaagagtcctatttataatcggtgcttgtaaatcaccatcatgc
tga
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