Camelina sativa (false flax): 104734879
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Entry
104734879 CDS
T05044
Name
(RefSeq) LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 20-like
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
csat
Camelina sativa (false flax)
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csat03009
]
104734879
Ribosome biogenesis [BR:
csat03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
104734879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Motif
Other DBs
NCBI-GeneID:
104734879
NCBI-ProteinID:
XP_019090587
UniProt:
A0ABM1QUZ9
LinkDB
All DBs
Position
13:3495057..3509103
Genome browser
AA seq
2835 aa
AA seq
DB search
MATAADSRAVKSHSNSEGRKRFVFKNFAEKVNEIESKVLKVFRSLHKVNDEPSQGSTYLK
DCLVEFRELNTAADFIKFYEEMLPCVQTLPLVALHQDLIFSKLVSGLHVKARFSLEAFLW
LIYALSRDLLDGFLPFLPQLVNSIVTLLRNGGQKEPDILEQIFLSWSHIVRDLQKYLICD
IEGILRDTLELRYYPGEHIIKLMSPSISFLLRTARDEQLEIGIKRILSEIAYPLKKCGGD
SILYHVMRGTSEHLHSKAGKVLSFLLKDSTLSLGDQLPQGSCSIVEALSSTLQRICKDFK
AEELFVMWNCLYEETKESIKNKATDHLSRLLTLLTSVVRVEKGLKVYDYPYLVGLVSQIV
PTFIDSSAVLDKVMGLMLCTIDSPSAANEMESIASQWAPIFSVKCSSLLSFLRELLAKDK
FILKAFTSNILSSINNMILVSPEEVIPLLLSLCESEQTSHERVNIIDESFESKFERIHEF
LEEKIKKIQTNIENIGLAQIEEAELAAALGAIKCFPYFKEDPSLLVCFKNTLIQHLAASV
VNTFSAPELMWQSLLGAALRSCHKFSSSGRLIDSHLEEALSLAKSYKSCVQVLSPVADYL
DFVYRPLLAKNDKACPELQANIAKDAFDIFSENLCHSKKDVRLVTLRILCHFETSYPKPS
FEEHPPMKKLRTEVMQKSSPESNNVLQLLKAIEESHLTVSTERELVKDINTIQNYLSAGR
IHDTYVPLVFKGMIGLFYNQFWEIWEPVSECLAVLMTKHTGAVWNDFVHYLGQCQLKLEA
LDNHSENENDSISQMHTVLIERFNSSDTIRSTPTGKVVSLLLKTLQKIPTVAQSRASDLL
PLLLKFLGYNSENPLRVGLYNGGACKGEEWKGLLLQWLALLKLMKNPRSSCFSQFVNDVM
ESRFLDHNDAEIQMSVLECLVLWNDYLLPHRHRLENLIKPKELREELATWNFSMDIEEAH
RCHFVSLVIRILMPKVRNLKTSASRKHTSIRHREAVLGLISQVDVNELSLFFALLMKPLN
IISEETMDLFWSSGKSSLDYFQKSNFLKSINADTISTLSWKKKFGFLHVIQHILEVFDVL
HVRPFLDFLMGCVVRLLITYDPNIDEEKSIDKEIVSTYLDQAGSSLKQFKELRSLCLKII
ARVLEKYKDCDLGSEFWDLFFSAVNSLIKSFKQEGSSSEKPSSLFSCFLSMSKSRSLITL
LCREESLIPDIFSVITVATASEAIKSSALSFIENLLCLESDLDDHDDDDHIIKGFLDPYI
EALINSLHSLFRWDMLKRKSFKYHGEREIKILKLLSKHIGDESNVMEYLDILLSFLDKRV
KDSDIHREALVAIKEITSFLGSESTSKIIDTISPLLVDAAHDVRLCICDLLISLAKIDPS
LDLMAKCVCDMNATSPMEVDDLDYETIIKAYAKIDADFFTKSSEQQMMIILSQSLYNISS
SEVTLKDCAFNLLCTFIEFSASILCQEASAHSDNGKEVSKSDATWTGDLVLWIINKFILK
HIGDALNRGISSGKEEILLIRKMVTKLPDSGNLAAFGPLCSENDDIDFFKNVFSIQIHRR
KKAINRFAKEIKDRSLPEGVMRKFLVSVFFNMLLDGENKKGQDRKGQNRKGQDKNVQNLH
DACAEALASVSAHMSWCSYYALLNRCFREMKTHTEDKRKRLLNLVCSILDKFHFAKDGHE
QEVRTCLEKTLFPKIQKLMDSESDSVTLRSYVAAVKVLKLLPKEIMDSNLDSLVYKISKF
LRHREDRTRDEARKVLAACLKELGLEGYLQLFLQKLVSLLNKGSEVHVLGYTVNSILSEC
LPNPTGWMLDHCLGNLLDVVEADILGDVDEHKEDRKYSLKKKETKTRKSLATLKLIAENV
TFRSHALKLLSLVTRQLQRPMTSNLKSKLEDMLKHIAFGIEGNPSVDQGDLFCFIYHRVE
DGNNNSSCLGDQASSVPSKKKRKSRHLQDSCGGKSCPHLITVFALDLLHKRLKKIQPRNT
NEELVSKLDPFVKLLVGCLSSKYEDVVSSSVSCFTALISLPLPSLKSEAGKVITITAESA
VSSSSHLVQSGKKVLKAVLGNEKFNFSSEELNMLIQLPMFVDLESDPSVDSLNASLSLLK
AIVKRKVPKIYDVADQVSKLMITHNDESVCKKCKELLLDFLVNHTLSKKRLEGHFNFLLK
NLSYEHSSGREVVLEVLEDLIKKFSQPKLGKQSVLDQQSQILFVELTRRLATDDAKDSLT
KICDLMKLLIGRTSNYKFCLELCLGWYKQENTQAKAAQVLGFFIEVRKEAFSEQIQSILL
QEAKSILESAVQLQNNTVEEGSIPFWKEAYLSLVMIEKMLKQFPDLCFAKHLEDVWKWVF
KLLLHPHVWLQIITCRLLNYYFKKLAESRKTVADSLLGKPSSLFMVAASLCFQLKINVIA
EEGNDQNNDVTEEDIVTQNIVFAVSGLHLRIGQSDHEYWSSLDKDEQAEFLEAFVLYDSG
KVRSTFLALTSGSEKSQDDVRKVLIGSLLKRMGKLALDMDVIHMRIVRIVLSVYKEFASR
LSQEECRLYAYRILFPLYKVSQGFTGKVISGELKQLAEEVRDSIRDERLGSQVFVQVYSE
IKKSLEAKREKRKREEKLMAVINPERNAKRKLKLASKNKANKKRRIMSSKXXXHEYWSSL
DKDEQAEFLEAFVLYDSGKVRSTFLALTSGSEKSQDDVRKVLIGSLLKRMGKLALDMDVI
HMRIVRIVLSVYKEFASRLSQEECRLYAYRILFPLYKVSQGFTGKVISGELKQLAEEVRD
SIRDERLGSQVFVQVYSEIKKSLEAKREKRKREEKLMAVINPERNAKRKLKLASKNKANK
KRRIMSNKMERWSRS
NT seq
8508 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgctgctgattctcgggctgtcaagtcacatagcaactctgagggaaggaag
agatttgtgtttaagaatttcgccgagaaagtgaatgaaattgaaagcaaggtcctcaaa
gtctttaggagcttacataaggtgaatgatgagccttcacagggttccacatatctcaag
gattgcctcgttgaatttagggaactgaatacagcagcggattttataaaattttatgaa
gaaatgttgccctgtgttcaaactctgccgttggttgccttgcatcaagatttaattttc
tctaaacttgtctctggtttacatgtcaaagcaagattctctctcgaagcctttctatgg
ttgatatatgctttatcgagggatctcttggacggctttcttcccttccttccacagctt
gttaactccatagtgactctcctgagaaatggtggacagaaagaaccagatattcttgag
cagatattcttatcatggtcgcacatagtgcgggatctgcagaagtatctcatatgtgac
atcgaaggtattctcagggatacattggagctgaggtattaccccggcgaacatatcatc
aaattgatgtcaccttccatatcatttttgttgaggactgcacgggatgagcaactcgaa
atagggatcaaaaggatcctctccgaaattgcatatccactgaaaaaatgtggaggagat
agtatactatatcatgtgatgaggggtacctctgagcatcttcattccaaagctgggaag
gttttgagtttcttactgaaagattcaacattgtccttgggtgatcaacttcctcagggt
tcttgtagtatagtagaagctttgagttcaactttgcaaagaatatgcaaggattttaaa
gcagaagaattatttgttatgtggaactgcctgtatgaagaaacaaaagaatcaatcaaa
aacaaagcaacagatcatttaagccgactcctgactcttcttacttcagttgttagggtt
gagaaaggtctcaaggtttatgattacccatatttggttggactcgtgagccagattgtg
ccaacttttatagattcctctgctgttcttgataaagttatgggactaatgttatgcacc
attgacagtcccagtgctgccaatgaaatggaatccattgcttcgcaatgggctcccatt
ttttccgtgaagtgttcgagtttgctgagttttttgcgagagttgctagctaaggataaa
ttcattctgaaagcctttacaagtaatatattaagttcgatcaacaatatgattttggtg
tctcctgaggaggttattcctctgttactatcactgtgtgagagtgagcaaacaagtcat
gagagggtgaacatcatagatgaatcatttgagagcaaatttgagagaattcatgagttc
ttggaagagaagattaagaaaatccaaacgaatatagagaatataggattagctcaaatt
gaagaggctgagttggctgctgctttgggagctatcaaatgttttccctattttaaagag
gatccatcattgctggtttgctttaaaaatactctcatacagcatttggcagcctcagtt
gtaaacacttttagtgctccggaactgatgtggcagagcttacttggtgctgctttgagg
tcatgtcacaaattctcttctagtggaagactcatcgacagtcatctagaggaagctttg
tctcttgctaaatcttacaagtcatgtgtacaagtgctgtctcctgtggctgactatttg
gattttgtgtataggcctctattagctaagaatgataaggcatgtccagagctccaagca
aatattgctaaagatgcgtttgacatattttctgaaaatttatgtcactctaaaaaagac
gtccgtcttgtgactttaaggattttgtgccattttgaaacttcgtatcccaagccttct
tttgaagagcatcctccaatgaagaaactgagaactgaagtcatgcaaaagtcttcccct
gaaagcaacaatgttcttcagttattgaaagcaatcgaggagtctcatctcacagtatcg
actgaaagggagttggtcaaggacattaatactatacaaaactatctctctgctggcagg
atacatgacacatatgtgccacttgtatttaagggaatgatagggttattttataatcaa
ttttgggaaatatgggaaccagtatctgagtgccttgcggttcttatgacgaagcacaca
ggagcggtgtggaatgattttgttcattatttgggccagtgccaactaaaacttgaagca
ctcgacaatcatagtgagaatgaaaacgacagcatttcacagatgcatactgttctgata
gagcgttttaattcgtctgatactatacggtccacacctactggaaaagtagtatctctg
ttgctcaagaccttacaaaaaattcccactgttgcacagtctcgagcctctgatcttctc
cctttgttattaaaatttctgggatacaacagcgaaaatcctttgagggtcggattatat
aatggcggagcttgtaaaggagaggagtggaaggggttgcttttacaatggttggcttta
ctgaagttgatgaagaatccgaggtcttcttgttttagtcagtttgtaaacgatgttatg
gagagcaggttcctagaccataatgatgctgaaatacaaatgagtgtcctagagtgcctt
gtgttgtggaatgactatctactcccacaccgccatcgcttggagaatttgatcaaacca
aaagaactgagagaagagctcgcgacctggaacttctccatggacatcgaagaagctcac
agatgtcattttgtttctcttgtaattaggatcctcatgcctaaagttaggaatttgaag
acttctgcgtcgcgtaagcatacaagtattcgtcaccgggaggcggttcttggccttata
tctcaggtagatgttaatgaactttctctgttcttcgcattgttgatgaagcctttaaac
atcatatcagaggaaacaatggacttgttttggagctcaggcaaaagctctctggattat
ttccaaaagtcgaattttctcaaatctatcaacgccgatactatttcgaccttatcctgg
aagaagaaatttggttttcttcatgtcatacaacacatacttgaagtctttgatgtatta
catgtccgaccatttctagactttctgatgggatgtgttgtccggctattgataacctat
gatccaaatatcgacgaagaaaagagcattgataaagagattgtttcaacatatctcgac
caggctggcagttctttaaagcaatttaaagagttgagatccttatgtttgaagatcatt
gctcgtgttcttgaaaagtacaaggattgtgatcttggctctgagttctgggacctcttc
ttttctgcagtgaattcgttaatcaagagttttaagcaggagggttctagcagtgagaaa
ccaagctcattgttctcatgcttcttgtcgatgagtaaaagccgcagtctcatcaccttg
ttatgtcgggaagagtctcttattccagacatattttcagttataacagtggccacagct
tcagaagctataaagtcctctgccttgagtttcatagagaatctgctctgtcttgagagt
gacttggatgatcatgatgatgatgaccatattatcaaaggattcttagatccatatata
gaggcactgattaacagcttgcattctcttttccgctgggatatgttgaaaaggaaatca
ttcaagtatcatggagaaagagagattaagatacttaaactattgtcgaagcacatcgga
gatgaatctaatgtaatggagtatttggatatcttgctgtctttcttggataaacgtgtg
aaagattctgatattcatcgtgaggctttggtagccattaaggaaatcacatcgtttctt
gggagtgagagtactagcaaaattattgatacaatctctcctctgcttgttgatgctgca
catgatgttagattatgcatttgtgatcttcttatatctcttgcaaaaatcgacccctct
ctggatctaatggcgaaatgcgtctgcgatatgaatgcaacctcacctatggaagttgat
gaccttgactatgaaacaataattaaagcttatgcaaagattgatgcagatttctttacc
aaatcctcggagcagcagatgatgattatactctcacagagtttatacaacatatcatca
tcagaagttactttaaaggattgtgcattcaacctcttgtgcacttttattgaattttca
gcttctatactttgccaagaggcttcagctcactctgacaatggcaaagaggtttcaaaa
tctgatgcaacctggacaggagatcttgtgttgtggattataaataagtttattttgaaa
cacattggagatgcactaaacagaggaatttctagtggaaaggaggagattctcttgata
cgcaaaatggtgacaaaacttccagattccgggaatcttgctgcattcggacccttatgc
tctgaaaacgatgacattgatttctttaaaaacgtctttagcattcagatacaccgtaga
aaaaaggcgattaaccgttttgccaaggagatcaaagatagaagtctgcctgagggcgta
atgagaaaatttctagtctcagtgtttttcaacatgctgcttgatggagaaaataaaaaa
ggtcaagacagaaaaggtcagaatagaaaaggtcaagataaaaatgttcaaaatctccat
gacgcatgcgcagaagcccttgcatccgtgtcagctcatatgagttggtgctcgtactac
gctctgctgaatcggtgtttccgtgagatgaagacgcatacggaggacaagagaaagcgt
ctgctgaacctcgtctgctcgattttggacaaatttcattttgcaaaagatggtcacgaa
caggaggttaggacttgcctcgagaaaaccttgttccccaagatacagaagctgatggat
tctgaatctgatagtgttactctgagaagctatgtagctgcggtgaaggttctaaagctg
ctccccaaagagataatggactcaaatcttgattctctagtttataaaatttccaaattt
ttaaggcatcgggaggaccgcacacgtgatgaagccagaaaggttctggctgcttgtttg
aaggaacttgggctggagggttacttgcaacttttccttcaaaaacttgtttcattactt
aacaaaggatctgaggttcatgtgctcgggtacactgtcaattccatcttatctgagtgc
ctgccaaaccctacgggttggatgttggatcattgtttgggaaatctccttgatgtggtg
gaagctgatatccttggagatgttgatgaacacaaagaggatagaaaatattcattgaag
aagaaagaaacgaaaacacgcaagtcacttgctactctgaaattgattgctgaaaatgta
acgttcagaagccatgcactgaagctcctttctctggtgactagacagctgcagaggcct
atgacttcaaatttaaaatccaaactggaggatatgttaaagcatattgcgtttggtatt
gaaggcaatccatctgtggatcaaggagatcttttctgttttatataccaccgtgttgaa
gatggtaataacaacagtagttgccttggagatcaagcgtcttctgtaccatccaaaaag
aaaaggaaatcgagacatctgcaagatagttgtggtggtaagtcctgtccacatctcata
accgtgtttgctctggacttattgcacaaaagacttaagaaaatccaacccaggaatact
aatgaagagctggtgtcgaagttggatccatttgtcaaattacttgttgggtgcttgagc
tctaaatatgaagatgttgtgtcttcatctgttagttgtttcactgcattaataagctta
cctttgccctccctcaagtctgaagcaggtaaagtgataaccatcactgctgagtctgca
gtgagttccagtagtcatcttgtgcagtcaggaaaaaaggttttaaaagctgttctcggc
aatgaaaaattcaatttctcatctgaggagttgaatatgctgattcagctccccatgttt
gttgatctggaatcggatccatctgtggattcattgaatgcttctctttcacttctcaag
gccattgtgaaaaggaaagttccgaagatatatgatgttgcggatcaggtttcaaagttg
atgatcacacataacgatgaatcagtctgcaagaagtgcaaagagttacttttagatttt
ttggtgaatcatacactctctaagaaacgcctagaaggacattttaactttctgctgaaa
aatctgagctatgaacattcaagtggaagagaagtagttcttgaggttcttgaagatctt
atcaagaaattctcacaacctaaactggggaagcagtcagttcttgaccagcagtctcaa
attttgtttgttgagcttactcgtcgcttggcaactgatgatgctaaagattcgctgacc
aagatctgtgatttgatgaaacttctgataggtcgcactagtaattataaattctgtctt
gagctatgtctgggttggtataagcaggagaacacacaggctaaagcagcacaggtactg
ggatttttcattgaagtcaggaaggaggcattttcggagcagatccagagtatattgttg
caggaggctaaatcgattttggagtctgctgtacagttgcaaaataatactgttgaggaa
ggcagcattcctttctggaaggaagcatacttatctcttgttatgatcgagaagatgctc
aagcagtttcctgatttatgtttcgcaaaacatttagaggatgtatggaaatgggtgttt
aagttgttgttgcacccacacgtatggttgcaaattataacctgccggctcctgaattac
tatttcaagaaattagccgagtctcggaaaacagtagctgattctcttcttggtaagcca
agtagccttttcatggtagctgcttctctttgcttccagttaaagataaatgtcattgca
gaagaaggcaacgaccaaaacaatgatgttactgaagaagatattgtcacacagaatatt
gtttttgccgtctctggtcttcatttaaggattggacagtcagatcatgagtactggtcc
agtcttgacaaggatgagcaagcggagttccttgaagcctttgtactatatgattcaggg
aaagtaaggtctactttcttggctcttacttcaggcagcgagaaaagccaagatgatgta
agaaaggtattgattggaagtttgctcaaaagaatggggaagcttgctcttgatatggac
gtgattcatatgagaatcgtgagaattgtgttgagcgtgtataaagaatttgcgtcaagg
ttgagtcaagaagagtgtcgcctatatgcctacagaattctgtttccgctgtacaaagtc
tcccaagggtttacagggaaagtcatctcaggtgagttgaaacagctagcggaagaggta
agagacagtataagagacgagaggttaggtagccaagtgtttgtgcaagtgtacagcgaa
atcaaaaagagtttggaagccaagagggagaagaggaagcgtgaggagaagctaatggcg
gtgataaaccctgagagaaacgcaaagaggaaactgaagctagcttcaaagaacaaggct
aacaagaaaaggaggattatgagcagtaaaatnnnnnntcatgagtactggtccagtctt
gacaaggatgagcaagcggagttccttgaagcctttgtactatatgattcagggaaagta
aggtctactttcttggctcttacttcaggcagcgagaaaagccaagatgatgtaagaaag
gtattgattggaagtttgctcaaaagaatggggaagcttgctcttgatatggacgtgatt
catatgagaatcgtgagaattgtgttgagcgtgtataaagaatttgcgtcaaggttgagt
caagaagagtgtcgcctatatgcctacagaattctgtttccgctgtacaaagtctcccaa
gggtttacagggaaagtcatctcaggtgagttgaaacagctagcggaagaggtaagagac
agtataagagacgagaggttaggtagccaagtgtttgtgcaagtgtacagcgaaatcaaa
aagagtttggaagccaagagggagaagaggaagcgtgaggagaagctaatggcggtgata
aaccctgagagaaacgcaaagaggaaactgaagctagcttcaaagaacaaggctaacaag
aaaaggaggattatgagcaataaaatggaaagatggtcacgctcttaa
DBGET
integrated database retrieval system
