Camelina sativa (false flax): 104735877
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Entry
104735877 CDS
T05044
Name
(RefSeq) general negative regulator of transcription subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
csat
Camelina sativa (false flax)
Pathway
csat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104735877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csat03019
]
104735877
Messenger RNA biogenesis [BR:
csat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104735877
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104735877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
104735877
NCBI-ProteinID:
XP_010454047
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Position
13:complement(7885409..7891090)
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AA seq
753 aa
AA seq
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MERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELE
GLSVKKGKTRPPRLTHLETSITRHKDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVE
RNQDDFDEFSDVDELYSTLPLDEVEGLEDLVTAGPLVKGTPLSMKSSLAATASQVRSISL
PTHHQSTSQDKTEDTSLPDSNAETVPRTPPPKNGAGLHSAPSTPAGGRPSLNVPASNVPN
ASVPLSTSIPAQISTESMGSLSPVAAKEEDAATLLSRKPPSSVADATLRGIGRVSIPNQP
QPSQPPSPIPANGSRISATSAAEVAKRNIMGVESNIQPLTSPLSKMVLPPTVKVNEGTVS
DSNPGDVAASIGRAFSPSIVSGSQWRPGSPFQNQNETVRGRTEIAPDQREKFLQRLQQVQ
QGHGNLLGMPSLSGGNEKQFSSQQQNPLLQQSSAISPHGSLGNGVQAPGFNVMNSAALQQ
QSNVMTQQLGHQSSVADVDHPRNDDQPQQNLPDDSTSITASKTIPNEDDSKVLFDTPSGM
PSYMLDPVQVSSGPDFSPGQPIQPGQSSSSLGVIGRRSNSELGAIGDPSALGPMHDQMHN
LHMLEAAFYKRPQPADSERPRPYTPRNPAITPSTFPQTQAPIINNPVLWERLGSDAYGTD
TLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQRHKEPKIATDEYEQGAYVYFDF
QTPKDENQEGGWCQRIKNEFTFEYSYLEDELAA
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atggagaggtttaaaatttgtgagaaagagactaagacaaaagccttctccaaggaagga
ctgggtcagcaacctaaaactgatccaaaagaaaaagcaaagtcagagacaagggattgg
ttgaacaatgtggtgagtgaacttgagtcgcagattgatagctttgaagctgagttggaa
ggactatctgtcaaaaaaggaaagacaagaccacccagattgactcatcttgagacatct
attacaaggcacaaggatcacataataaagttggaactgatcttgaggcttctggacaat
gatgaattaagtccagaacaagtaaatgacgtcaaagattttctggacgattatgtggaa
cgaaatcaggatgattttgacgaattcagtgatgtcgatgagctctatagcacgttgcca
ctagatgaggtagagggtcttgaagatctagttactgctggcccccttgtaaagggtact
cctttgagcatgaagagttctttggcagcgacagcatctcaagttcggagcataagtttg
ccaactcatcatcagagtacttctcaagataaaacagaggatacgtctttaccagatagc
aacgctgagacggttccgagaacccctcccccaaagaatggcgcaggccttcactcagca
ccatcaacacctgctgggggacgtccaagtttgaacgtgcctgctagtaatgttccaaat
gcatcagttcccttgtcaacttctattcctgctcaaatttccacagaaagcatgggaagt
ttgtctcctgtggctgccaaggaagaagacgcagcaaccttgctttctcgtaaaccaccc
tcatctgttgctgatgctacattaaggggcattgggagagttagtatccccaaccagccc
caaccaagccagcctccgtctccaattccagctaacgggtctcgcattagtgcaacttca
gctgctgaggttgcaaagagaaatataatgggagttgagagcaacatccaacctctaact
tctccactgagcaaaatggtattgccaccaactgtgaaggttaatgagggaactgtctct
gatagtaaccctggtgatgttgcggctagtattggtagagctttttcaccatctattgta
tctggttcgcagtggaggcctggtagtccctttcagaatcagaatgaaacggtccgtggg
agaactgaaatagcacccgatcaaagagagaaatttttacagaggttacagcaagtacag
caaggccatggtaacctcttaggcatgccttctctatctggaggaaacgagaagcagttt
tcttcacaacagcaaaatcctctcttacagcagagctctgccatctctcctcatggaagc
ttgggaaacggagttcaggcaccaggttttaatgtcatgaactctgccgccttacagcag
cagtcaaatgtaatgactcaacaattgggtcaccagtcttctgttgcagatgtagaccat
cccagaaatgatgatcaaccgcagcaaaacttacctgatgattcaacttccataacagca
tcaaaaacaattccaaatgaggatgattctaaagttctatttgataccccgtcgggaatg
cccagctacatgttggatccagtacaggtatctagcggtcctgatttctctcctggacaa
cccatacaaccgggtcaatcttcaagtagccttggggtcattggtcggagaagtaactct
gaattaggagccattggtgacccttcagctttagggccaatgcatgatcaaatgcacaat
cttcatatgctcgaagctgctttctataaacgtcctcaacccgcagattcagaacgtcct
agaccctatactccgaggaacccagcaatcacaccttcaacatttcctcaaacacaagca
ccaatcataaacaaccctgtgctctgggaacgtttaggcagcgacgcttatgggacggat
actttgttctttgcgttttactatcagcagaactcatatcagcaatatctagctgcaaaa
gagctgaagaaacagtcgtggagataccacagaaagttcaacacttggtttcagagacat
aaagagccaaagattgcaaccgatgagtatgaacaaggagcttatgtttatttcgatttc
caaacccccaaagatgagaatcaagagggaggatggtgtcagaggatcaaaaacgagttc
acgtttgaatacagttatcttgaagatgaactcgccgcatag
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